The largest database of trusted experimental protocols

Methylbutane

Manufactured by Merck Group
Sourced in Japan, Hungary, Netherlands

Methylbutane is a chemical compound used in laboratory settings. It is a colorless, flammable gas with a distinct odor. Methylbutane serves as a reagent and intermediate in various chemical processes and analyses.

Automatically generated - may contain errors

16 protocols using methylbutane

1

Histological Analysis of Rat Eye Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
For histology, rat eyes were embedded in Tissue Tec OCT (Paesel and Lorey) and snap frozen in methyl butane (Merck). Air-dried cryosections (8 µm) were post-fixed in ice-cold acetone for 10 min, stained with hematoxilin (Merck), and graded to obtain a pathology score as described (36 (link)). For immunofluorescence staining, acetone-fixed sections were pre-incubated with PBS containing 3% normal rabbit serum and 3% donkey serum for 15 min at room temperature (RT), washed once with PBS, and then incubated with rabbit anti-rat FoxP3 antibody (Novus Biologicals, Abingdon, UK; diluted 1:500 in PBS), mouse anti-rat TCR-ab-FITC clone R73 (eBioscience, diluted 1:40), or mouse anti-rat TCR-gd-FITC clone V65 (Aviva Systems, diluted 1:6) for 1 h at RT in the dark. Control stainings were performed with secondary antibody only. After PBS washes, Cy3-conjugated donkey anti-rabbit IgG(H + L) (Jackson Laboratories) was added (1:100 in PBS) and incubated for 1 h at RT in the dark. The slides were washed, mounted with Entellan (Merck), imaged with a Zeiss Axioskop 2plus (Carl Zeiss), and photographs taken with a Sony CyberShot DSC-S70 3.3 mp digital camera.
+ Open protocol
+ Expand
2

Immunohistochemical Detection of cFos, BrDU, and Nesfatin-1 in Hypothalamus

Check if the same lab product or an alternative is used in the 5 most similar protocols
The perfusion-fixed brains were cryoprotected in 20% sucrose (Merck) solution and then frozen in dry ice-cold methyl-butane (Merck). Free-floating 50 μm thick serial coronal sections of the hypothalamus were cut by a frigomobil (Frigomobil, Reichter-Jung, Vienna, Austria). Immunohistochemistry was performed using standard protocols. For cFos immunostaining we used a rabbit anti-cFos (1:20,000, Cat. # ABE 457, Merck) primary antibody. The cFos signal was developed by using the standard ABC method and nickel-diaminobenzidine as chromogen. For BrDU and nesfatin-1 double fluorescence immunostaining, the sections were treated with 2N HCl at 37°C for 30 min to perform antigen retrieval. The following primary antibodies were used: mouse anti-BrDU (1:1,000, Cat. # B8434, Merck) and rabbit anti-nesfatin-1 (1:6,000, Cat. # H-003-22, Phoenix, recognizes also NUCB2 protein). The BrDU and nesfatin-1 immunostainings were visualized sequentially by using TSA Kits containing Alexa Fluor 488 and 568 fluorophores, respectively (Cat. # T20912, T20924, Thermo Fisher Scientific). Microwave treatment in 0.1 M citric acid at pH 6 was used to eliminate the activity of the secondary antibody conjugated peroxidase enzyme between the two detection steps (Toth and Mezey, 2007 (link)).
+ Open protocol
+ Expand
3

Immunohistochemistry of Cardiac Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemistry experiments, different hearts were dissected into left and right ventricles and fixed by immersion in 1% paraformaldehyde (w/v) in PBS at 4°C for 1 h. Fixed tissue was then washed and cryoprotected by immersing it through a series of sucrose solutions (series of 10, 20 and 30% w/v). Excess sucrose solution was removed before a thin layer of O.C.T. compound (Tissue-Tek) was applied to coat the tissue. The tissue was snap-frozen for 2 min by immersion in methylbutane (Sigma) within a container of liquid nitrogen. Frozen tissue blocks were cryosectioned with a Feather Blade at −20°C. Ten microlitre-thick sections were obtained and attached to coverslips until immunofluorescent labelling.
Cardiac tissue sections were treated with Image-iT FX signal enhancer (Thermo Fisher Scientific) for 1 h at room temperature (20–22°C) prior to incubation with primary antibodies (RyR: MA3-916 (Thermo Fisher Scientific); sodium–calcium exchanger: R3F1 (Swant); caveolin-3: 610420 (BD Transduction)), overnight at 4°C, and diluted 1 : 200 in incubation solution. After washing in PBS, sections were then incubated with secondary antibodies (as above) for 2 h at room temperature, in incubation solution.
+ Open protocol
+ Expand
4

Analyzing Notch Signaling in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Columbia University Institutional Animal Care and Use Committee approved protocols used in animal studies. All mice were maintained on a C57BL/6 background. For assessment of wild type expression patterns, we used C57BL/6J virgin female mice and males of proven fertility (The Jackson Laboratory). The CBF:H2B-Venus transgenic mouse strain that expresses human histone H2B fused to yellow fluorescent protein (YFP) Venus in response to Notch/CSL transcriptional activation was used to determine Notch activity [38 (link)]. Mice were bred; noon on the day a mating plug was observed was designated embryonic day (E) 0.5. Pieces of uteri and implantation sites from pregnant females at E3.5 and E6.5, respectively, were embedded in Tissue-Tek® O.C.T.™ Compound (Sakura Fine Technical Co, Ltd, Tokyo, Japan), snap-frozen on dry ice in ethanol and stored at −80 °C in methylbutane (Sigma-Aldrich).
+ Open protocol
+ Expand
5

Immunohistochemical Detection of P75 and VERSICAN

Check if the same lab product or an alternative is used in the 5 most similar protocols
For P75 and VERSICAN detection, hindguts were fixed in 4% formaldehyde in PBS for 1 h and infiltrated with 15% sucrose/PBS overnight at 4 °C. The medium was changed to 7.5% gelatin containing 15% sucrose at 37 °C for 1 h and the tissues were rapidly frozen at −50 °C in methylbutane (Sigma-Aldrich, Budapest, Hungary). Frozen sections were cut at 12 μm thickness, collected on poly-l-lysine-coated slides (Sigma-Aldrich, Budapest, Hungary) and stained by immunocytochemistry as previously described [60 (link)]. Briefly, after rehydration, sections were incubated with primary antibodies for 1 h. Primary antibodies used were anti-p75 NTR (1:2000, kind gift of Dr. Louis Reichardt [61 (link)]) and anti-Versican (1:500, kind gift of Dr. Maria T. Dours-Zimmerman [62 (link)]). Sections were incubated with biotinylated goat anti-rabbit IgG (1:200, Vector Laboratories BP-9100-50, Burlingame, CA, USA) for 45 min and avidin-biotinylated peroxidase complex (Vectastain Elite ABC kit, Vector Laboratories PK-6105, Burlingame, CA, USA) for 30 min at room temperature. Endogenous peroxidase activity was quenched by incubation for 10 min with 3% hydrogen peroxide (Sigma-Aldrich, Budapest, Hungary) in PBS. Binding sites of the primary antibodies were visualized by 4-chloro-1-naphtol (Sigma-Aldrich, Budapest, Hungary).
+ Open protocol
+ Expand
6

Tissue Preparation for Microscopic Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
The mice were sacrificed 1 and 2 weeks post-transplantation. Following rapid extraction, the brains were suspended in 4% PFA for 24 h at 4 °C, after which they were transferred to 30% sucrose for 48 h at 4 °C. The brains were then frozen using methyl butane (Sigma-Aldrich) and stored at − 80 °C until needed for further evaluation. The tissue was then sectioned at 30 μm on a cryostat (Vibrotome UltraPro 5000). The tissue collected spanned the entire striatum. The slices were then mounted on positively charged microscope slides (Globe scientific Inc., Paramus, USA). Images were collected with a Zeiss Axio Imager M1 microscope (Carl Zeiss AG).
+ Open protocol
+ Expand
7

HDAC1/3 Inhibitor RGFP109 Administration

Check if the same lab product or an alternative is used in the 5 most similar protocols
The HDAC1 and HDAC3 inhibitor RGFP109 (RG2833; CAS No. 1215493-56-3) was purchased from Selleckchem. RGFP109 was dissolved in dimethyl sulfoxide and diluted in 0.9% NaCl (1:2) directly before use (final concentration: 15 mg/ml). Mice were administered RGFP109 (30 mg/kg body weight) or an equal volume of vehicle solution by intraperitoneal injections five times a week for 3 weeks (total of 23 days) starting at the age of 11–14 weeks. All injections and behavioral tests were done around the same time of the day to avoid any biochemical and physiological changes over the experiments. Mice were deeply anesthetized using isoflurane and sacrificed by cervical dislocation 18 h after the final injection. Brains were removed and separated into right and left hemispheres. One hemisphere was flash frozen at −80°C in methyl butane (Sigma-Aldrich) for immunohistochemical analysis, one was further dissected for RNA extraction and immunoblot analyses of striatum.
+ Open protocol
+ Expand
8

Perfusion-Fixation of Mouse Brains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult mice were given a lethal dose of Euthanal (pentobaribital sodium, Merial, U.K., http://www.merial.co.uk) and perfused with ice‐cold PBS followed by ice‐cold 4% PFA. Brains were dissected and further fixed in 4% PFA overnight at 4°C. For immunohistochemistry, fixed brains were cryoprotected in 15% sucrose and 7.5% gelatine and frozen in methylbutane (Sigma‐Aldrich) in dry ice.
+ Open protocol
+ Expand
9

Cryopreservation and Imaging of Pancreatic Islets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pellets of the pancreatic islets were fixed using formaldehyde (4%, Sigma-Aldrich) overnight. The islets were then washed using PBS. Pellets were centrifuged (1 min at 1300 rpm), the supernatant was removed and agarose (2%, Sigma-Aldrich) was added. Pellets in the agarose were immediately centrifuged (1 min at 1800 rpm). After the agarose solidified, the pellets were transferred into sucrose (30%, Sigma-Aldrich) for overnight incubation at 4 °C. After incubation, the islets were transferred to Tissue-Tek (Sakura, Alphen aan den Rijn, Netherlands) and frozen in methylbutane (Sigma-Aldrich, St. Louis, MO, USA) cooled by liquid nitrogen. Frozen pellets were stored at −80 °C. Sections (20 μm) from the pancreatic islet pellets were cut using a cryomicrotome (Leica CM1950). The samples were stained with diamino-phenylindole (DAPI, Sigma-Aldrich, St. Louis, MO, USA) and mounted with a vectashield (Vector H-1000, Burlingame, CA, USA) on a glass slide. For confirmation of the nanoparticle signal and its location, the Olympus FV1200MPE (Olympus life Science, Tokyo, Japan) confocal microscope was used (green background - Argon laser λ = 488 nm, DAPI - EPI lamp λ = 405 nm, ICG - LD599 laser λ = 647 nm). The images were taken using 20× (air) and 60× (oil immersion) objectives under 200× or 600× magnification respectively.
+ Open protocol
+ Expand
10

Bone Tissue Preparation and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Femurs and tibias were collected, cleaned and put in PBS, 2% paraformaldehyde (PFA) (Sigma-Aldrich) overnight. For cryosectioning and immunostaining, bones were washed once with PBS, decalcified in 250 mM EDTA and PBS for 1.5 weeks at 4 °C, put in 15% sucrose and PBS for 24 h then in 30% sucrose and PBS for another 24 h, and embedded with OCT (catalog no. 12678646, Thermo Fisher Scientific) in plastic cryomolds (catalog no. 4557, Sakura), using chilled methyl-butane (Sigma-Aldrich) for snap-freezing. The samples were stored at −80 °C and sections (12 µm) or whole mount were obtained using a cryostat (Leica Biosystems). Alternatively, after fixation bones were embedded in paraffin and 5-µm-thick sections were stained with hematoxylin and eosin and Masson’s trichome for conventional morphological evaluation. The Acid Phosphatase Leukocyte Kit (TRAP, catalog no. 387A, Sigma-Aldrich) staining was used according to the manufacturer’s recommendations.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!