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5 bromo 2 deoxyuridine

Manufactured by Thermo Fisher Scientific
Sourced in France, United States

5-bromo-2'-deoxyuridine is a synthetic nucleoside analog that can be incorporated into DNA during cell division. It is commonly used in research applications to study cell proliferation and DNA synthesis.

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10 protocols using 5 bromo 2 deoxyuridine

1

Cell Cycle Regulation and Apoptosis

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The fluorogenic probe 2′, 7′-dichlorofluorescin diacetate (DCFH-DA, D6883) was from Sigma. 5-bromo-2′-deoxyuridine (BrdU, 000103) was provided by Thermo Fisher Scientific. Anti-BrdU antibody (#5292S), anti-phospho-H3-S10 (#3377), anti-topoisomerase II α (#12286), anti-phospho-P53 (#9284), anti-P21(#2947), anti-CDK1(#9116), anti-phosphor-CDK1(Tyr15) (#9111), anti-Cyclin B1(#4138), anti-PARP (#9542) and anti-Caspase 3 (#9662) were purchased from Cell Signaling Technology, anti-P53 (#AP6266d) was from Abcepta. Anti-β-Tubulin and anti-GAPDH antibodies were from Beijing TransGen Biotech (Beijing, China). Prestained Protein Ladder (26616) and M-PER buffer were from Thermo Pierce. FITC Annexin V Apoptosis Detection Kit I (#556547) and PI/RNase Staining Buffer (550825) were from BD Biosciences, protease inhibitor and phosphatase inhibitor cocktails were from Roche and the PVDF membrane was from Millipore.
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2

Neonatal Mouse Cardiomyocyte Isolation and Anoxia Treatment

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Cardiomyocytes were isolated from neonatal C57BL/6 mice (aged 1–2 days, weight 1–3 g, a random mix of male or female; purchased from the experimental Animal Center of Harbin Medical University) as previously described, from mice that were sacrificed following purchase (18 (link)). Briefly, the heart was digested by pancreatin (cat no. C0201; Beyotime Institute of Biotechnology, Haimen, China) and maintained in Dulbecco's modified Eagle's medium (DMEM; cat no. 11965084; Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA) supplemented with 100 U/ml penicillin and 10% fetal bovine serum (FBS; cat no. 04-001-1A; Biological Industries, Kibbutz Beit Haemek, Israel) (18 (link)). Cardiomyocytes were purified by differential adherence and 0.1 mM 5-bromo-2-deoxyuridine (cat no. B23151; Thermo Fisher Scientific, Inc.) was added to suppress cardiac fibroblasts for 48 h in a 5% CO2 and 37°C humidified atmosphere. Then, as the anoxia (ANO) group, ANO+EPI group or ANO+EPI+LY group, the purified cardiomyocytes were treated with an equal amount of DMEM or EPI (5 µM) or EPI (5 µM) + LY294002 (20 µM) separately in a 5% CO2 and 37°C humidified atmosphere for 1 h and then incubated under anoxia condition at 37°C for 12 h. As the control group, the purified cells were treated with an equal amount of DMEM in a 5% CO2 and 37°C humidified atmosphere for 13 h.
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3

Analyzing Chromosomal Structural Changes

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To assess SCEs, cells were treated with 10 μM 5-bromo-2′-deoxyuridine (Thermo Fisher Scientific) for 48 hours. Next, either fresh medium or medium containing 50 nM MMC was added. 18 hours later, KaryoMAX colcemid (0.3 μg/ml; Thermo Fisher Scientific) was added to the plates for 2.5 hours. After trypsinization, cell suspensions were centrifuged, resuspended in 0.075 M KCl, and incubated at 37°C for 7 min. Next, cells were fixed by dropwise addition in ice-cold 3:1 methanol:acetic acid and stored at 4°C overnight. The next day, cells were pelleted, resuspended in 1 ml of fixative, and dropped on microscope slides (Thermo Fisher Scientific). The day after, slides were rehydrated for 5 min in PBS and stained with Hoechst 33342 (2 μg/ml; Thermo Fisher Scientific) in 2× SSC (pH 7.0) for 15 min. Subsequently, slides were covered with a thin layer of 2× SSC and irradiated with UVC (5400 J/m2; UV Crosslinker CX-2000, VWR). Afterward, slides were dehydrated in a series of ethanol dilutions (70, 95, and 100%) 5 min each and left to air-dry. Slides were imaged and were quantified manually, in a blinded fashion.
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4

Quantifying β-cell Proliferation In Vivo

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To assess β-cell proliferation in vivo, mice were treated with 0.8 mg/ml of the synthetic nucleoside and thymidine analog 5-bromo-2′-deoxyuridine (BrdU; Thermo Fisher Scientific) 1 wk during the second month of diet treatment. After isolation and sectioning, pancreases were stained for BrdU and insulin to determine the amount of proliferating β cells. The images obtained with the Pathway 855 imaging system (BD Biosciences, San Jose, CA, USA) were analyzed with the Cell Profiler (http://cellprofiler.org/). Nuclei were identified by DAPI staining; the intensities of the insulin and BrdU staining were measured in the nucleus and displayed as histogram. Insulin-positive objects were defined as β cells. BrdU-positive and -negative cells were identified and used for calculating the percentage of BrdU-positive β cells.
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5

Quantifying Hepatocyte Proliferation

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Two hours prior to euthanasia, mice were administered 5′-bromo-2′-deoxyuridine (100 mg/kg; Sigma) i.p. Formalin fixed paraffin embedded (FFPE) liver sections were incubated with primary antibody at 4 °C overnight. Secondary antibody was applied for 1.5 h at room temperature, and nuclei were counterstained with DAPI. Ten high-powered fields (400×) were visualized, and 5-bromo-2′-deoxyuridine (BrdU)-positive hepatocytes were counted on an immunofluorescence microscope (Invitrogen EVOS M5000).
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6

BrdU Cell Proliferation Assay

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Cells were incubated with BrdU (5-Bromo-2′-deoxyuridine, 10 µM, Invitrogen) for 3 h, and analyzed after DAPI staining using an ARIA II (BD Biosciences, France). Analysis was performed on 10,000-gated events. Violet laser (405 nm) and Pacific Blue filter were used for DAPI detection, and Red laser (640 nm) and APC filter for BrdU detection. Data analysis and figure generation were performed using the FACS Diva version 6.1.2 program (BD Biosciences, France).
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7

Isolation and Culturing of Rat Cardiomyocytes

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Cardiomyocytes were isolated from the hearts of neonatal Sprague Dawley rats that were ≤3 days old (SLAC Laboratory Animal Co., Ltd., Shanghai, China), and the isolated cells were cultured as described previously with minor modifications (27 (link)). To obtain the cardiomyocytes, heart tissue was digested with 0.1% collagenase type II (Invitrogen Life Technologies) and 0.125% pancreatin (Sigma-Aldrich, St. Louis, MO, USA) for 8 min at 37°C. Following centrifugation, the supernatant was discarded and the cell pellets were resuspended in culture media containing 10% FBS. These steps were repeated until the hearts were completely digested. Cells were pre-plated for 90 min to allow fibroblasts to attach and to yield a purer cardiomyocyte population. The cardiomyocytes were maintained in DMEM containing 10% FBS, 0.1 mM 5-bromo-2′-deoxyuridine (Invitrogen Life Technologies) and 100 IU/ml 0.3% penicillin-streptomycin to inhibit the growth of other cell types. Following 3 days in culture, the cardiomyocytes were subjected to subsequent experimentation.
The cardiomyocytes were divided into the following eight groups: Normoxia (N), TSPG-treated normoxia (N + TSPG), Rg1-treated normoxia (N + Rg1), SM-treated normoxia (N + SM), I/R, TSPG-treated I/R (I/R + TSPG), Rg1-treated I/R (I/R + Rg1) and SM-treated I/R (I/R + SM).
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8

BrdU Labeling for Proliferation Analysis

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At the endpoint of both migration and integration studies, samples were labeled with 5-bromo-2-deoxyuridine (BrdU, Invitrogen) to assess cellular proliferation. Single channel studies of meniscus cells were incubated with BrdU labeling reagent (1:50) at 37°C for 4 h, and explants (1:50) at 37°C overnight. Samples were then fixed for further histological processing.
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9

BrdU Labeling Protocol for Cell Tracking

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About 100 mg BrdU (5-Bromo-2′-Deoxyuridine) (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA) were dissolved in 32.5 mL anhydrous DMSO (Sigma-Aldrich, Burlington, MA, USA) to prepare a 10 µM stock solution. Then 10 µL of stock solution was diluted in 10 mL of 37 °C tissue culture medium to make a 10 µM labeling solution. The cells were trypsinized, counted, and collected in a sterile tube. Then, the cells were removed from the culture medium, placed in a BrdU labeling solution, and incubated at 37 °C for 2 h. The labeling solution was removed and the cells were washed two times with PBS. Finally, the cells were washed twice with a complete growth medium to be ready for transplantation [18 (link)].
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10

Neurogenesis Profiling in Mouse Brain

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Mice were anesthetized with pentobarbital sodium (40 mg/kg) and perfused with 4% paraformaldehyde. Brains were post-fixed for 24 h with 4% paraformaldehyde. BrdU (5-Bromo-2´-Deoxyuridine) (5 mg/kg; Invitrogen) was injected intraperitoneally into mice in the last 2 days of CPP training. Tissues were sectioned coronally at 40 μm on a freezing microtome.
Immunohistochemical analyses were performed as described previously with modifications [28] . Briefly, sections were boiled in EDTA buffer, pH 8.0, and blocked in 3% BSA for 0.5 h at room temperature. Incubation with primary antibodies was performed at 4°C overnight. Secondary antibodies were applied to sections for 50 min at room temperature. The following primary antibodies were used: rat anti-nestin (1:300; Ab6142; Abcam); rabbit anti-DCX (1:500; Ab18725; Abcam); rabbit anti-NeuN (1:3000; Ab177487; Abcam). Secondary antibodies were conjugates of Alexa Fluor 488 (1:200; Abcam). The labelling of BrdU was preformed according to the instructions of EdU staining kit (RiboBio Co.), and DAPI (4′,6′-diamidino-2-phenylindole) (0.01%; Invitrogen) was used as nuclear counterstain.
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