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16 protocols using anti rb

1

Antibody Acquisition for EMT Analysis

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Anti-vimentin, anti-Snail, and anti-Slug antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-NUCB2, anti-Twist1, and anti-Ki-67 antibodies were obtained from Abcam (Cambridge, MA, USA). Anti-E-cadherin, anti-p21waf1, anti-BCL2, and anti-cyclin D1 antibodies were from Dako (Copenhagen, Denmark). Anti-p27kip1, anti-Rb, anti-X-linked inhibitor of apoptosis (XIAP), anti-BAX, and anti-N-cadherin antibodies were from BD Biosciences (San Jose, CA, USA). Anti-ZEB1 and anti-β-actin antibodies and adriamycin (ADR: D1515) were from Sigma-Aldrich Chemicals (St. Louis, MO, USA). Anti-phospho (p) Rb at Ser807/811, anti-cleaved caspase-3, and anti-poly (ADP-ribose) polymerase 1 (PARP1) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-cyclin A2 and anti-cyclin B1 antibodies were from Novocastra (Newcastle, UK) and Santa Cruz Biotech (Santa Cruz, CA, USA), respectively.
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2

Immunoblotting Analysis of Protein Signaling

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Tissues or tumors were processed for protein isolation after snap freezing in liquid nitrogen. Protein extracts were prepared and subjected to immunoblotting as previously described (32 (link)). The following antibodies were used: anti-MAML2 TAD (catalog 4618), anti–phospho-RB (Ser807/811, catalog 8516), anti–phospho-EGF receptor (Tyr1068, catalog 3777), and anti-EGFR (catalog 2232) from Cell Signaling Technology; anti-FLAG (catalog PAI-984B) from Thermo Fisher Scientific; anti-RB (catalog 554136) from BD Biosciences; anti–β-actin (catalog 5316) from Sigma-Aldrich; anti-CDK4 (catalog sc-260), anti-CDK6 (catalog sc-177), and anti-P16 ( catalog sc-56330) from Santa Cruz Biotechnology; and anti–β-tubulin (catalog 1799-1) and anti-GAPDH (catalog 2251-1) from Epitomics. The protein bands on Western blots were quantified by using ImageJ software (NIH).
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3

Immunoblot Analysis of Cell Signaling Proteins

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Cells were treated with HQGGT, HQ, GG, SM, BS, GC, BI, BE, WO, and WS for 48 h and processed for immunoblot analysis as previously described [12 (link)]. The following primary antibodies (obtained from Cell Signaling Inc. unless noted) were used at the indicated dilutions: anti-TS, 1:2000 (#9045); anti-E2F1, 1:1000 (#3742); anti-GAPDH, 1:10,000 (#5174; #sc-47724, Santa Cruz); anti-p-NDRG1, 1:1,000 (#5482); anti-NDRG1, 1:1,000 (#9408); anti-p-P65, 1:5,000 (#3033); anti-P65, 1:5,000 (#8242); anti-PUMA, 1:1,000 (#4976); anti-p-RB, 1:1,000 (#9307); anti-RB, 1:1,000 (#9313); anti-CHK1, 1:1,000 (#2345); anti-HSP27, 1:1,000 (#2402); anti-CyclinB1, 1:1,000 (#12231); anti-STAT3, 1:5,000 (#9139); anti-MCL1, 1:1,000 (#5453); anti-CDK4, 1:1,000 (#12790); anti-CDK6, 1:1,000 (#3136); anti-CyclinD1, 1:1,000 (#2978); anti-DHFR, 1:1,000 (#610696, BD Biosciences); anti-TK1, 1:1,000 (#40688, Novus Biologicals). Proteins were detected using SuperSignal West Pico substrate (Pierce; Rockford, IL). Quantitation of signal intensities was performed by densitometry on a HP scanner using NIH IMAGEJ software.
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4

Biochemical Characterization of PI3K Inhibitors

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Dactolisib and pictilisib were purchased from Stratech Scientific (Suffolk, UK) and rapamycin from Merck (Nottingham, UK). Anti phospho-4EBP1 (Cat# 2855S), 4EBP1 (Cat# 9644), phospho-AKT (Cat# 4060S), AKT (Cat# 4691S), phospho-ribosomal S6 (Cat# 4858S) and ribosomal S6 (Cat# 2217S) antibodies were purchased from NEB (Hitchin, UK). Anti phospho-Rb (Cat# 44–582 G) was supplied by Invitrogen (Paisley, UK) and anti-Rb (Cat# 554136) by BD Biosciences (Oxford, UK). All other reagents were analytical grade where available and supplied by Sigma (Gillingham, UK).
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5

Western Blot Analysis of Cell Signaling Proteins

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Cells were lysed with SDS lysis buffer (100 mM Tris, pH 8.8, 1% SDS, 5 mM EDTA, 20 mM DTT, and 2 mM AESBF). Total cell extracts were resolved on an SDS polyacrylamide gel using the Mini-PROTEAN Tetra cell System (Bio-Rad) and blotted onto a Hybond P PVDF membrane (GE Healthcare) using the Mini Gel Tank transfer system (Life Technologies). After being blocked with PBST 5% non-fat dry milk (Bio-Rad), membranes were incubated over night with primary antibodies at +4°C, washed and hybridized for 1 h at room temperature using the appropriate horseradish peroxidase-conjugated secondary antibody (rabbit and mouse, Bio-Rad, Hercules, California, USA). Detection was performed with the ECL chemiluminescence kit (Perkin Elmer, Waltham, Massachusetts, USA). The following antibodies were used: anti-FOXM1 (Ab184637, Abcam; dilution 1:300), anti-p63 (Ab735, Abcam; dilution 1:300), anti–β-actin (Sigma; dilution 1:30000), anti-p16 (SC-56330 (JC8), Santa Cruz Biotechnology; dilution 1:1000), anti-Rb (BD554136, BD Biosciences; dilution 1:500), anti-Keratin10 (PRB-159P, Covance; dilution 1:1000), anti-HA (16612, Covance; dilution 1:1000), anti-cMyc (SC-40 (9E10), Santa Cruz Biotechnology; dilution 1:200).
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6

Western Blot Analysis of Cell Signaling

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Cells were lysed in RIPA buffer containing Protease Inhibitor Cocktail (Roche). Sample proteins (20 μg) were separated by SDS-PAGE and then transferred to PVDF membranes. After blocking in 10% nonfat milk for 1 h at room temperature, membranes were incubated with primary antibodies overnight at 4°C or 2 h at room temperature. The membranes were then incubated with horseradish peroxidase-labeled secondary antibodies and visualized with ECL. The following primary antibodies were used: anti-p53 (1:500, CST), anti-phosphorylated p53 (Ser15) (1:500, CST), anti-acetylated p53 (1:800, CST), anti-Chk2 (1:500, BD Biosciences), anti-p21 (1:500, BD Biosciences), anti-p27 (1:1800, BD Biosciences), anti-p16 (1:1,200, SAB), anti-p19 (1:600, Thermo), anti-Rb (1:500, BD Biosciences), anti-p130 (1:800, Abcam), anti-Caspase 3 (1:800, CST), anti-PARP (1:800, CST), anti-Bax (1:500, CST), anti-CDK4 (1:800, CST), anti-CDK6 (1:800, CST), anti-E2F1 (1:500, BD Biosciences), anti-Foxo1 (1:500, Millipore), anti-Foxo3a (1:500, Millipore), anti-Sirt1 (1:800, CST), and anti-γ-tubulin (1:8000, Millipore).
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7

Western Blot Analysis of Cell Cycle Proteins

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Western blot assay was proceeded as standard procedure. The membranes were incubated overnight at 4°C with anti-CDK3, anti-CDK6, anti-E2F2, anti-Rb or anti-p-Rb antibodies (BD PharMingen). Blotted membranes were blotted with an anti-a-Tubulin rabbit monoclonal antibody (Sigma) as a loading control.
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8

Immunoblot Analysis of Cell Signaling Proteins

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Whole cell lysates were prepared in NP-40 lysis buffer and analyzed by immunoblotting with anti-MUC1-C (LabVision), anti-MYC (Abcam), anti-β-actin (Sigma), anti-CDK4 (Cell Signaling Technology), anti-cyclin D1 (NeoMarkers), anti-phospho-Rb, and anti-Rb (BD Biosciences) as described (28 (link)). Immune complexes were detected with horseradish peroxidase secondary antibodies and enhanced chemiluminescence (GE Healthcare).
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9

Antibody Panel for Cancer Signaling

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Anti-p53, anti-p21waf1, anti-cyclin D1, and anti-bcl2 antibodies were purchased from Dako (Copenhagen, Denmark). Anti-HNF-1β, anti-GSK-3β, anti-Rb, anti-p27kip1, anti-XIAP, anti-bax, and anti-integrin β1 antibodies were obtained from BD Biosciences (San Jose, CA, USA). Anti-ARID1A, anti-cyclin B1, and anti-MDM2 antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-Snail, anti-Akt, anti-phospho(p) Akt Serine473, anti-pGSK-3β Serine9, anti-pRb Serine807/811, anti-cleaved caspase-3, and anti-integrin β3 antibodies were from Cell Signaling Technology (Danvers, MA, USA). Anti-fibronectin (FN), anti-E-cadherin, and anti-β-actin antibodies were obtained from Abcam (Cambridge, MA, USA), Takara (Shiga, Japan), and Sigma-Aldrich Chemicals (St. Louis, MO, USA), respectively. Anti-cyclin A2 and anti-integrin β2 antibodies were from Novocastra (Newcastle, UK) and Merck KGaA (Darmstadt, Germany), respectively. FN (catalog number #F2006) and cisplatin (CDDP: #479306) were purchased from Sigma-Aldrich Chemicals.
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10

Comprehensive Protein Expression Analysis

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Co-immunoprecipitation and subsequent Western blotting was performed as described previously (15 ). Antibodies include: anti-ERG (ab92513, Abcam; CM421C, Biocare Medical), anti-PTEN (CST9559L, Cell Signaling Technology), anti-p53 (sc126, Santa Cruz Biotechnology), anti-AR (sc816, Santa Cruz Biotechnology), anti-NKX3.1 (NB100-1828, Novus Biologicals), anti-RB (554136, BD Biosciences), anti-pRB S795 (CST9301S, Cell Signaling Technology), anti-SKP2 (32-3300, Life Technologies), anti-CCND1 (sc718, Santa Cruz Biotechnology), anti-CDK1 (sc54, Santa Cruz Biotechnology), anti-TWIST (sc6269, Santa Cruz Biotechnology), anti-CDH1 (610181, BD Biosciences), anti-VIM (sc73258, Santa Cruz Biotechnology), anti-ERK2 (sc1647, Santa Cruz Biotechnology), anti-CDK2 (sc6248, Santa Cruz Biotechnology), anti-E2F1 (sc193, Santa Cruz Biotechnology), anti-pAKT S473 (CST4060L, Cell Signaling Technology), anti-AKT (CST9272, Cell Signaling Technology).
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