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Model j 810

Manufactured by Jasco
Sourced in Japan

The Model J-810 is a Circular Dichroism (CD) Spectrometer. It is designed to measure the differential absorption of left and right circularly polarized light by chiral molecules. The instrument is capable of recording CD spectra in the UV-visible wavelength range.

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8 protocols using model j 810

1

Measuring WPIN Secondary Structure

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The secondary structural changes of WPINs were measured according to the previously described methods using CD spectroscopy [30 (link)]. CD spectra were observed with a Jasco spectropolarimeter (Model J-810, Jasco, Tokyo, Japan) in the far ultraviolet (190–260 nm) region and at room temperature. The final protein concentration of the WPINs solution was diluted to 0.25 mg/mL. Each scan was repeated three times and averaged.
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2

Determining Protein Secondary Structure via CD

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Secondary structure during fibrillation was analyzed by far-UVCD spectra. We diluted 50 µL of sample solution 2-fold in glycine buffer (5 mM, pH 2.0) in a quartz cell with a 1 mm path length. The CD spectra measurement was recorded on a circular dichroism polarimeter (Model J-810, Jasco, Japan) by scanning the sample from 195 to 260 nm at 25°C using a bandwidth of 1 nm, a step interval of 1 nm, an average time of 0.5 s, and a slit-width of 0.02 nm. The spectra of glycine buffer were subtracted from sample spectra for data analysis.
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3

Far UV CD Analysis of NS Proteins

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Far UV CD measurements were performed using a Jasco Model J-810 spectropolarimeter connected to a CDF-426S/L Peltier system (Jasco). Data were collected for NS proteins using the “spectral measurement program” (data pitch, 0.2 nm; scan speed, 100 nm/min; response, 2 s; bandwidth, 1 nm; and wavelength, 190 to 240 nm). Purified NSwt, NSsm, and NStm proteins were analyzed at 0.1 mg/ml in 5 mM phosphate buffer (pH 7.4; filtered and degassed); all samples were analyzed using a 0.1-cm cuvette set at 37°C. Output spectra were averaged from 10 scans. Data were analyzed using DichroWeb software against the SMP 180 dataset optimized for 190 to 240 nm using the CONTIN program (47 (link), 48 (link)) and plotted as mean residue ellipticity versus wavelength.
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4

Circular Dichroism Spectroscopy of Proteins

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The circular dichroism (CD) spectra were measured by a Jasco Model J810 spectro-polarimeter flushed with nitrogen gas. A quartz cuvette with a path length of 0.1 cm was used to contain protein samples. The protein samples were dissolved in Tris-HCl buffer (20 mM, pH 7.4) and the same Tris-HCl buffer supplemented with 2 or 10 mM CaCl2. The final concentration of the protein was ~10 μM. The spectra were recorded at a scan rate of 50 nm/min and were corrected for buffer contributions.
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5

Quantifying Protein Secondary Structure

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The contents of secondary structural elements in CTR were determined by scanning ellipticity over wavelength using JASCO spectropolarimeter (Model J-810). Since determination of the protein concentration is critical for the secondary structure estimation, CTR with a small molecular mass had to be concentrated for quantification. Hence, the His6-tag of the CTR protein was left intact. The concentration of His6-CTR was quantified by employing the calculated molar extinction coefficient at λ = 280 nm (2,560 M−1cm−1). CTR protein with the final concentration of 6 μg/mL was analyzed using a 0.1 cm path-length cuvette to obtain the spectrum. Various secondary structure estimation programs such as K2D [22 ] K2D2 [23 ] and SELCON [24 (link)] were applied on the CD data for approximation of the helical content.
The thermal stabilities of the TBC1D4 proteins were measured (λ = 222 nm) by carrying out temperature induced unfolding experiments with ~0.5 mg/mL of TBC1D4 RabGAP, RabGAP-CTR1, RabGAP-CTR2, and CTR proteins in GF buffer. Molar ellipticity values were calculated and fitted to a sigmoidal curve for determination of the melting temperature.
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6

Circular Dichroism Spectroscopy of SOMAmer Reagent

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Circular dichroism spectra were collected using a Jasco Model J-810 spectropolarimeter. Spectra were collected in the range 5–85°C, at intervals of 10°C, in the 320–200 nm range, at a resolution of 0.5 nm, a scanning rate of 50 nm/min, a bandwidth of 1 nm, a response of 2 s, 6 accumulations per scan, at standard sensitivity (100 mdeg). The SOMAmer reagent concentration was 1 mg/ml (0.1 mM) in 130 mM NaCl, 20 mM Na-phosphate, pH 7. The cell pathlength was 1 cm.
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7

Circular Dichroism Spectropolarimetry Protocol

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Data were recorded on a Jasco circular dichroism spectropolarimeter (Model J810) as described previously11 (link), 14 (link).
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8

Structural Integrity Analysis of Catalase

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To test the structural integrity of catalase treated with acetone, the primary and secondary structures of treated catalase or PAAM-n(catalase) were characterized. Native catalase, PAAM-n(catalase), catalase treated with acetone, and PAAM-n(catalase) treated with acetone were heated for 5 min at 95 °C and analyzed via sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Gel electrophoresis was conducted for 2 h on 10% acrylamide gels with a 5% stacking gel at 120 V. The gels were run until the tracking dye had just exited the gel and then were stained with Coomassie blue brilliant R-250. In addition, circular dichroism (CD) analysis was performed on a spectrophotometer (Model J-810, Jasco, Tokyo, Japan). Native catalase, catalase treated with acetone and PAAM-n(catalase) treated with acetone were prepared at 0.2 mg/mL. Measurements were collected at 37 °C over the wavelength range of 250–190 nm.
The morphologies of catalase treated with acetone and PAAM-n(catalase) treated with acetone were assessed using a high-resolution transmission electron microscope (TEM, Jem-2100F, JEOL Ltd., Tokyo, Japan), and samples were stained with 2% phosphotungstic acid before observations.
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