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38 protocols using p mapk

1

Investigating PDCD4, PTEN, and HER2 Pathways

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Antihuman PDCD4 (#9535), PTEN (#9188), p-HER2 (Tyr1248) (#2247), p-MAPK (#9101), MAPK (#9102), p-AKT (Ser473) (#9271), AKT (#9272), GAPDH (#2118) antibodies were obtained from Cell Signaling Technology. Antihuman HER2 antibody (#06–562) was from Abcam Inc. Antihuman ERα (HC-20) antibody (sc-543) was from Santa Cruz Biotechnology. The p44/42 MAPK siRNA (#6560) was obtained from Cell Signaling Technology. The nontargeting control siRNA (sc-37007) was from Santa Cruz Biotechnology. The AKT inhibitor MK-2206 was obtained from Selleck Chemicals. The ER antagonist fulvestrant was from Sigma-Aldrich. The anti-miR-21 inhibitor and inhibitor negative control were purchased from Ambion.
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2

Western Blot Analysis of Apoptosis Regulators

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Cells were lysed in RIPA buffer (50 mM Tris-Cl at pH 7.5, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 1 mM EDTA, 1 μg/mL leupeptin, 1 μg/mL aprotinin, 0.2 mM PMSF) and proteins (20–40 μg) were separated on 8–10% SDS/PAGE gel and then transferred onto PVDF membranes (Millipore, Billerica, MA). After blocking procedure, membranes were incubated with primary antibodies (1:1000), HRP-conjugated secondary antibodies (1:5000), and visualized in Imager (Bio-Rad) using ECL system (Thermo Fisher Scientific, Rochester, NY). Antibodies of GAPDH, Bcl-2, Bcl-xL, Bax, and p53 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA), and antibodies of Mcl-1, p-Akt, p-Erk, p-Stat3, and p-MAPK were purchased from Cell Signaling (Danvers, MA). Antibodies of ATM, CHEK1, TP73, and ERCC1 were obtained from Bethyl Laboratories (Montgomery, TX).
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3

Multiparameter Immune Cell Analysis

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The following antibodies (to human) were from BD Biosciences (Fremont, CA, USA): fluorescein isothiocyanate conjugated anti-human CD4, phycoerythrin (PE)-conjugated anti-human CD4 and IL-17A, allophycocyanin (APC)-conjugated anti-human CD25, phycoerythrin-Cy7-conjugated anti-human IFN-γ, IL-4, and their isotype-matched control antibodies (mouse IgG1, mouse IgG2a). The following antibodies were from eBioscience (San Diego, CA, USA): PE-Cy7-conjugated Foxp3. Purified anti-human CD3, anti-humanCD28, anti-human IL-6 antibodies and recombinant IL-6 antibodies were all from R&D Systems (Minneapolis, MN, USA). AKT inhibitor (GSK690693), p38/MAPK inhibitor (SB203580) and STAT3 inhibitor (NSC74859) were from Sigma-Aldrich (St. Louis, MO, USA). Human IL-6, TGF-β ELISA kits were from BioLegend (San Diego, CA, USA). The following antibodies (to human) were from Cell Signaling technology (Inc., USA): STAT3, AKT, MAPK, p38, p-ERK1/2, p-MAPK, p-AKT, p-p38. The following antibodies (to human) were from Proteintech (Inc., China): ERK1/2, ERK1/2, p-STAT3, and GAPDH.
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4

Investigating Estrogen Receptor Signaling

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Western blot analysis used specific antibodies for ERα (HC-20, Santa Cruz); ERK2 (D-2, Santa Cruz); and pS6, pS6K, pmTOR, pRAPTOR, pRICTOR, pMAPK (Cell Signaling). Coimmunoprecipitation assays used antibodies for SRC3 (Santa Cruz, C-20) and ERα (Santa Cruz, F10). ChIP assays were carried out as described (9 (link), 11 (link)). Antibodies used were for ERα (HC20), ERK2 (Santa Cruz, D2 and C14), and pSer5 RNA Pol II (Santa Cruz, sc-47701). ChIP DNA was isolated using QIAGEN PCR purification kit and used for ChIP-seq analysis and quantitative real-time PCR (qPCR). qPCR was used to calculate recruitment to the regions studied, as described (9 (link)).
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5

Western Blot Analysis of Signaling Proteins

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Whole-cell lysates were prepared with Mammalian Protein Extraction Reagent, M-PER (ThermoFisher Scientific) supplemented with protease inhibitor cocktail and phosphatase inhibitor cocktail (Sigma-Aldrich, St. Louis, MO). Lysates were separated by SDS-PAGE and transferred to nitrocellulose membranes (BioRad, Hercules, CA). The resulting blots were subjected to Odyssey band intensity analysis for PTEN (6H2.1, Cascade Bioscience, Portland, OR), pMAPK, tMAPK, pAKT, tAKT, PDI, PERK, p_elF2α, t_elF2α, Bip, Ero1_Lα, IRE1α, E-Cadherin, Vimentin, and GAPDH (Cell Signaling Technology, Inc, Danvers, MA) protein levels. Western blot quantification was performed with ImageJ (43 (link)).
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Western Blot Analysis of Mouse Ovary Proteins

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Proteins were extracted from the ovary tissues of mice using RIPA buffer containing protease inhibitors. Total protein was separated by 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes. The membranes were then incubated with the following specific primary antibodies obtained from Cell Signaling Technology (Danvers, MA, USA): TP53 (rabbit, 1:1000), p-AKT (rabbit, 1:1000), AKT (rabbit, 1:1000), p-MAPK (rabbit, 1:1000), and MAPK (rabbit, 1:1000). The membranes were then incubated with HRP-conjugated secondary antibodies. Eventually, the protein bands were photographed and images were developed.
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7

Immunoblotting for Immune Checkpoint Proteins

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Cells were lysed in RIPA buffer (50 mM Tris-Cl at pH 7.5, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 1 mM EDTA, 1 μg/mL leupeptin, 1 μg/mL aprotinin, 0.2 mM PMSF). Proteins (20–40 µg) were separated on 8–10% SDS/PAGE gel and then transferred onto PVDF membranes (Millipore, IPVH00010). After the blocking procedure, membranes were incubated with primary antibodies (1:1000) and HRP-conjugated secondary antibodies (1:5000), and visualized in Imager (Bio-Rad) using ECL system (Thermo Fisher Scientific, 34095). Antibodies used were: PD-L1 (R&D, MAB1086), NKG2D (R&D, MAB139), PD-1 (R&D, MAB1086), p-JAK1 (Y1022, Assay Biotech, A7125), p-JAK2 (Y1007 + 1008, Abbomax, 601–670), JAK1 (Abgent, AP20699a), JAK2 (Abgent, AP20700c), p-Stat1 (S727, Millipore, 07–714), Stat1 (Abgent, AP19835Bb), p-Stat3 (Y705, Abcam, ab76315), Stat3 (Abcam, ab5073), p-Stat5 (Y694, Abcam, ab32364), Stat5 (Abcam, ab16276), p-MAPK (Cell Signaling, 9101 S), p-Erk (Cell Signaling, 4695), p-Akt (S473, Cell Signaling, 9271), p-NFκB (S536, Abcam ab86299), and GAPDH (Cell Signaling, 2118 S).
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8

Western Blot Analysis of Signaling Pathways

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Cells were lysed in RIPA buffer (50 mM Tris-Cl at pH 7.5, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 1 mM EDTA, 1 μg/mL leupeptin, 1 μg/mL aprotinin, 0.2 mM PMSF). Proteins (20-40 μg) were separated on 8–10% SDS/PAGE gel and then transferred onto PVDF membranes (Millipore, Billerica, MA). After blocking procedure, membranes were incubated with primary antibodies (1:1000), HRP-conjugated secondary antibodies (1:5000), and visualized in Imager (Bio-Rad) using ECL system (Thermo Fisher Scientific, 34095). Antibodies used were; PD-L1 (R&D, MAB1086), p-JAK1 (pY1022, Assay Biotech, A7125), p-JAK2 (pY1007 + 1008, Abbomax, 601-670), p-MAPK (cell Signaling, 9101S), p-Erk (Cell Signaling, 4695), p-MEK (Ser 217/221, Cell Signaling, 9121), p-Akt (S473, Cell Signaling, 9271), and p-Stat3 (pY705, Abcam, ab76315), p-Stat1 (pY701, Abbomax, 620-160), p-Stat5 (Abcam, pY694, ab32364), p-NFκB (S536, Abcam ab86299), p-mTOR (Millipore, 09-345), JAK1 (Abgent, AP20699a), JAK2 (Abgent, AP20700c), Stat1 (Abgent, AP19835b), MEK (Ameritech, ATB-T2715), MAPK (Signalway, 21245), ERK (Ameritech, ATB-T5371), Akt (Santa Cruz, sc5298) and GAPDH (Cell Signaling, 2118S).
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9

Western Blot Analysis of Neuronal Signaling

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Brain homogenates were resolved by SDS–polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to activated PVDF membranes. The membranes were blocked with 5% bovine serum albumin in tris-buffered saline/Tween 20 (TBST). The following primary antibodies were incubated overnight at 4°C: TrkA (1:1000; Cell Signaling, 2505), p75NTR (1:1000; Santa Cruz Biotechnology, sc-271708), pAkt (1:1000; Cell Signaling, 4060), Akt (1:1000; Cell Signaling, 9272), pCREB (1:1500; Cell Signaling, 9198), CREB (1:1500; Cell Signaling, 9104), pMAPK (1:2000; Cell Signaling, 9101), MAPK (1:2000; Cell Signaling, 9102), pJNK (1:1000; Cell Signaling, 9251), JNK (1:1000; Cell Signaling, 9252), βtubIII (1:5000; Covance, MMS-435P), and β-actin (1:5000; Sigma-Aldrich, A5316). Membranes were washed in TBST, incubated with corresponding IRDye secondary antibodies at 1:15,000 for 1 hour at RT (LI-COR Biosciences), and imaged with an Odyssey infrared imaging system (LI-COR Biosciences). Densitometry analysis was performed using ImageStudio software.
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10

Western Blot Analysis of Signaling Pathways

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Cells were lysed in a sample buffer containing 2% SDS, 60 mmol/L Tris‐HCl (pH 6.8) and 5% glycerol. Cell lysates were boiled for 5 minutes. Protein concentration was determined using a BCA kit (Beyotime, Shanghai, China), and equal amount of protein was loaded for Western blot analysis as previously described.11 Primary antibodies against ERK1/2, p‐ERK1/2, p38, p‐p38, JNK1/2, p‐JNK1/2, PKCδ, p‐PKCδ, PKA, p‐PKA, MARK2, p‐MAPK, LKB1, p65 and p‐p65, as well as secondary antibodies, were all from Cell Signaling Technology (Boston, MA, USA). Anti‐β‐actin antibody was from Proteintech (Wuhan, China). Blots were developed using enhanced ECL chemiluminescence reagents (Pierce, Thermo Scientific, Waltham, MA, USA) according to the manufacturer's instruction. β‐actin was used as a loading control.
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