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6 protocols using β actin

1

Quantification of miR-33a-5p and eIF5A2 in Breast Cancer

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Total RNA from breast cancer cells was extracted using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.). A transcriptional First-Strand cDNA Synthesis kit (Takara Bio, Inc.) was used for the reverse transcription, and qPCR was performed using SYBR Green PCR Master Mix (Takara Bio, Inc.). The thermocycling conditions of the PCR were as follows: 15 sec at 95°C, and 60 sec at 60°C for 45 cycles. Primers for eIF5A2, β-actin, miR-33a-5p and U6 were obtained from GeneCopoeia, Inc. U6 was used as the internal control for miR-33a-5p. β-actin was used as the internal control for eIF5A2. Data were analyzed using the 2−ΔΔCq method (17 (link)). The primer sequences were as follows: miR-33a-5p: 5′-GTGCATTGTAGTTGCATTGCA-3′; eIF5A2: Forward, 5′-TATGCAGTGCTCGGCCTTG-3′; reverse, 5′-TTGGAACATCCATGTTGTGAGTAGA-3′; β-actin: Forward, 5′-TTCCAGCCTTCCTTCCTG-3′; reverse, 5′-CTTTGCGGATGTCCACGT-3′.
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2

RNA Extraction and qPCR Analysis of Neurotrophic Factors

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A total RNA extraction kit (Tiangen Biotech, Beijing, China) was used to extract total RNA from BV2 cells pretreated with VD11 for 12 hours. The RNA purity and concentration were measured using an ultra-microspectrophotometer (Thermo Fisher Scientific). The cDNA was reverse transcribed using a SureScript kit (GeneCopoeia, Guangzhou, China) in a total volume of 20 μL at 25°C for 5 minutes, 42°C for 15 minutes, and 85°C for 5 minutes, and then held at 4°C. A BlazeTaq kit was used for polymerase chain reaction (PCR) amplification (GeneCopoeia, Guangzhou, China). β-Actin (5′-TCA TCA CTA TTG GCA ACG AGC-3′, 5′-AAC AGT CCG CCT AGA AGC AC-3′), NGF (5′-TCT ATA CTG GCC GCA GTG AG-3′, 5′-GGA CAT TGC TAT CTG TGT ACG G-3′), and BDNF (5′-CTC CTG GGT TCC TGA GCA TC-3′, 5′-TTC ACT CCC TGA GTC ACA GC-3′) primers were purchased from GeneCopoeia. A Life Technologies thermocycler (Thermo, Waltham, MA, USA) was used to perform the qPCR reaction. The 2–ΔΔCt method was used to calculate the mRNA expression of NGF and BDNF, which was normalized to β-Actin (Yin et al., 2021).
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3

Quantitative Analysis of PANX1 Expression

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Total RNA was extracted using RNeasy Mini Kit (Qiagen, Valencia, CA) and the reverse transcription was performed using High-Capacity cDNA Reverse Transcription Kit (Thermo Fisher Scientific) per the manufacturers' protocols. The synthesized cDNA was used as the template for quantitative PCR using iQ™ SYBR® Green Supermix kit (BioRad, Hercules, CA) on Mastercycler ep realplex (Eppendorf, Mississaugua, ON, Canada) real-time PCR system with validated All-in-One qPCR primers for human PANX1 (Cat#: HQP006368; fwd: GCTGTTCAGCAGAAGAACTCAC, rev: TCTGAGCAAATATGAGGAGCAG) and β-actin (Cat#: HQP016381; fwd: CCAACCGCGAGAAGATGA; rev: CCAGAGGCGTACAGGGATAG) (GeneCopoeia, Rockville, MD). Relative expression levels were determined using the comparative Ct method. Results were normalized to Human Neuron Total RNA (prepared from early passage neurons from human brain, Cat#: 1525, ScienCell, Carlsbad, CA).
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4

Quantifying PELI1 and miR-30c-5p Expression

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Total RNA was isolated using Trizol reagent (Invitrogen) or mirVana RNA isolation kit (Ambion, Austin, TX) according to the manufacturer’s protocol. Real-time PCR was performed with All-in-one™ qPCR Mix (Genecopoeia) in a QuantStudio 5 Real-Time system (Thermo Fisher Scientific, Waltham, MA). All of the primers for real-time PCR, including PELI1 (HQP0504204), β-actin (HQP016381), Has-miR-30c-5p (HmiRQP0396) and U48 (HmiRQP9021) were purchased from Genecopoeia (Guangzhou, China). The relative expression of PELI1 and miR-30c-5p was normalized to β-actin and U48 respectively, and evaluated by the 2−ΔΔCt method, based on our previous description [21 (link), 22 (link)].
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5

Vitamin D Receptor Expression Regulation

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1ɑ,25(OH)2D3 (Abcam, USA) was reconstituted in 100% ethanol and stored, protected from light, at -20°C. Anti-vitamin D receptor (VDR) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA). IMag Cell Separation System was from MiltenyiBiotec, Germany. The miRNeasy kit for RNA isolation was from Qiaqen, USA. 1×SYBR Master Mix was from GeneCopoeia, USA. The qRT-PCR kit was also from GeneCopoeia, USA. Magnetic separation was from MiltenyiBiotec, Germany. The primers of miRNA-10a (ID: hsmq-0760), miRNA-125a (ID: hsmq-0483), miRNA-342 (ID: hsmq-0481), miRNA-374b-5p (ID: hsmq-0585), miRNA-377 (ID: hsmq-0255), miRNA-410 (ID:hsmq-0161), U6 (ID:hsnRNAU6), and VDR (ID:Hs-QRP-40488), CYP27B1 (ID:Hs-QRP-30404), CYP24A1 (ID:Hs-QRP-30402), and β-actin (ID:Hs-QRP-20056) were designed by GeneCopoeia USA.
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6

Quantitative Analysis of HMMR and CD44 Expression

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SH-SY5Y cells were transduced, selected with puromycin, differentiated with RA and treated accordingly. RNA was extracted using a Qiagen RNeasy kit (cat # 74104, Qiagen) and cDNA was made using a kit (cat# 18080051, Thermo Fisher) according to manufacturer instructions. A LightCycler 2.0 (Roche) was used to carry out qPCR reactions in triplicate from three independent experiments using a Fast Evagreen master mix (cat# 31003, Biotium) and the following primer sets: HMMR (cat# HQP100236, Genecopoeia), CD44 (cat# HQP022975, Genecopoeia) and β-Actin (cat# HQP016381, Genecopoeia). Relative expression levels for HMMR and CD44 transcripts were normalized to β-Actin transcript levels for each sample.
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