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14 protocols using g418 sulphate

1

Rat Basophilic Leukemia Cell Culture

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All experiments were performed with rat basophilic leukaemia cells (RBL-703/21-derived NFATp-DsRed-Express2) generated at The University of Nottingham16 (link). These are available from the authors for non-commercial purposes on the basis of a material transfer agreement (MTA). Cells were grown in Minimum Essential Medium Eagle’s (EMEM) cell culture medium supplemented with 10% v/v heat-inactivated foetal bovine serum (Gibco, UK), 100 U/mL penicillin, 100 μg/mL streptomycin and 2 mM L-glutamine (Merck, UK) in a 37 °C/5% CO2 humidified cell incubator. To maintain stable expression of FcεRIαH, cells were cultured with 1 mg/mL G418 sulphate (Thermo Fisher Scientific, UK) and 20 μg/mL Blasticidin S HCL (InvivoGen, USA) for selection of NFATp-DsRed-Express2 reporter gene expression.
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2

Cell Culture Conditions for SIAT1 Expression

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AX4 cells and (Madin-Darby canine kidney (MDCK)-β-galactoside α2,6-sialyltransferase I (SIAT1) cells, which express higher amounts of six-linked sialic acids on their cell surface via exogenous expression of human SIAT1 (or ST6Gal I) [15 (link),16 (link)] were maintained in Eagle’s minimal essential medium (MEM) containing 10% fetal calf serum (FCS) and Dulbecco’s modified eagle medium (DMEM) containing 5% fetal calf serum and 1 mg/mL G418 sulphate (ThermoFisher Scientific, Tokyo, Japan), respectively. Both cell lines were incubated at 37 °C under 5% CO2 and were passaged by the standard procedure.
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3

Genetically Modified B16-F10 Cell Line Protocol

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B16-F10 was originally purchased from ATCC (CRL-6475) and genetically modified to express ovalbumin, eGFP, and neomycin phosphotransferase (Veliça et al., 2021 (link)). The resulting ovalbumin-expressing B16F10 cells were cultured in DMEM high glucose with pyruvate (11995065 Thermo Fisher) containing 0.75 mg/mL G418 sulphate (10131027, Thermo Fisher). HEK293 was a gift from Prof. Dantuma (Karolinska Institute, Stockholm) and cultured in DMEM high glucose with pyruvate. SKOV3 was purchased from ATCC (HTB-77) and cultured in McCoy’s 5A Medium (16600082, Thermo Fisher). Raji-GFP-Luc were purchased from Biocytogen (B-HCL-010) and cultured in complete RPMI (21875, Thermo Fisher). All media was supplemented with 1% penicillin streptomycin (15140122 Thermo Fisher) and 10% fetal bovine serum (FBS, A3160802 Thermo Fisher). Cell lines were frozen at low passage number (<5) in DMEM containing 10% DMSO and were typically passaged 3–4 times between thawing and experimental use. Cell line identities were confirmed by species-specific PCR analyses where relevant in non-human lines, as well as by functional properties. Otherwise cell lines were, as described above, obtained as authenticated lines from ATCC and were tested mycoplasma negative.
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4

Human iPSC-CMs and Heterologous Cell Lines

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Human iPSC-CMs, differentiated from reprogrammed fibroblasts obtained from a healthy male (Axol Biosciences) were cultured on fibronectin-coated glass coverslips and maintained in Cardiomyocyte Maintenance Medium (Axol Biosciences) for 14 days, after thawing before the start of experiments. For immunolabeling, cells were fixed in 2% PFA (5 min at room temperature).
CHO cell lines stably expressing hNaV1.5 or hNaV1.6 (B’SYS GmbH) were cultured in F-12 medium with glutamine (Thermo Fisher Scientific) supplemented with 10% (v/v) FBS (MilliporeSigma) and 1% penicillin-streptomycin solution at 10,000 U/mL (Thermo Fisher Scientific). G-418 sulphate (500 μg/mL) and 2 μg/mL puromycin (Thermo Fisher Scientific) were added to the medium to select for CHO-hNaV1.5, and 500 μg/mL hygromycin (Thermo Fisher Scientific) was used to select CHO-hNaV1.6. Cells were cultured at 37°C in 5% CO2 in a humidified atmosphere.
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5

hMSC Viability and Morphology on Mesh

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The hMSC cells (passage 5) were seeded onto the mesh sample disks at a density of 1 × 104 cells/disk and cultured at 37 °C, 5% CO2 in ATCC Mesenchymal Stem Cell Basal Medium (ATCPCS500030) supplemented with ATCC Mesenchymal Stem Cell Growth Kit (ATCPCS500040) and 0.2 mg/mL Geneticin selective antibiotics (G418 Sulphate, Thermo Fisher Scientific, Brisbane, Australia). The cells on the mesh samples were assessed for their viability and morphology with the following in vitro assays: alamarBlue assay, LIVE/DEAD assay, fluorescent microscopy and scanning electron microscopy (SEM) imaging.
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6

Engineered MDCK-SIAT1 cells for sialylation

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MDCK-SIAT1 cells engineered to over-express α2,6-sialyltransferase (Matrosovich et al., 2003 (link)) were provided by M. Matrosovich (Marburg, Germany) and maintained in DMEM (Cat.No.D6429, Sigma) supplemented with 10 % heat-inactivated foetal calf serum, 100 µg mL-1 penicillin-streptomycin (Cat.No.P4333, Sigma) and 1  mg mL−1 G418 Sulphate (Cat.No.11811–031, Life Technologies) at 37 °C, 5 % CO2.
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7

Establishing Melanoma Cell Lines

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SKMel28 and MM200 melanoma cells were kindly provided by P. Hersey, University of Sydney, and grown in Dulbecco’s Modified Eagle Medium (DMEM) with 10% FBS and glutamine (Sigma-Aldrich) and cultured in a 37 °C incubator with 5% CO2. Cell authentication was confirmed using the StemElite ID system from Promega and all cells tested negative for mycoplasma (MycoAlert Mycoplasma Detection Kit, Lonza, Basel). Lentiviruses were produced in HEK293T cells as described previously30 (link). Cells were infected using a multiplicity of infection of 1–5 to provide an efficiency of infection above 90%. Cells transduced to express the tetracycline receptor from the pLenti3.3/TR vector were used in all transduction experiments. The MYC-tagged AKT3E17K, HA-tagged PIK3CAH1047R or MYC-tagged NRASQ61K were each cloned into the plenti6.3/T0/V5-DEST lentiviral vector (Thermo Fisher). Cells were selected with 500 µg/ml geneticin (G418 Sulphate) and 4 µg/ml blasticidin (Life Technologies) to ensure maintenance of transgene expression.
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8

Purification of LDLR Ectodomain with Tags

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The LDLR construct encoding the N-terminal extracellular ectodomain (1–789 amino acids) plus c-myc and His tags was purified by affinity chromatography from cells transfected with the pcDNA3.1-EC-LDLR-His plasmid, kindly provided by Prof. Leren28 (link). Briefly, HEK293 cells at 70–80% confluency were transfected with the plasmid by calcium phosphate method for 24–48 h and selected in successive passages by geneticin (G-418 sulphate, Gibco, Invitrogen). For EC-LDLR expression and purification, the growing medium of positively transfected cells was changed to Opti-MEM (Invitrogen) without geneticin and maintained under these conditions for other three days. Then the medium was harvested, supplemented with protease inhibitors (complete EDTA-free, Roche) and the LDLR ectodomain was affinity purified using one-step nickel affinity chromatography. For protein long-term maintenance, the buffer was changed to storage buffer (50 mM Tris-HCl, 50 mM NaCl, 10% glycerol, and 0.01% Brij-35, pH 7.5)29 (link) and frozen to −80 °C.
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9

Retroviral Transduction of Macrophages with PPE2

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The wild-type PPE2 as well as the NLS-mutants of PPE2 constructed earlier were cloned into pCX4neo vector at EcoRI and HpaI restriction sites with a 3X FLAG-tag appended to the forward primer. These pCX4neo clones containing PPE2 and its mutants were co-transfected in PLAT-E cells using Lipofectamine 2000 along with VSVG and VSVG-P vectors. The medium was changed after 5 hours and the culture was left for 70 hours. The supernatant containing recombinant viruses were collected and filtered through 0.44 μm filter. The RAW 264.7 macrophages pre-treated with 5 μg/ml polybrene for 1 hour were infected with these viruses and the positive clones were selected using geneticin (G418 sulphate, Invitrogen). The stable cells were frozen in 10% DMSO in FBS. The protein expression was confirmed using anti-FLAG monoclonal antibody (Sigma-Aldrich, USA) as well as with anti-PPE2 polyclonal antibody.
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10

Purification and Mutagenesis of LDL Receptor

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The LDL receptor ectodomain (1–789 amino acids) plus c-myc and His tags in both wild type (wt) and p.(Cys46Gly) LDLr variant were purified from cells transfected with the pcDNA3.1-EC-LDLR-His plasmid, kindly provided by Prof. Leren [25 (link)] and pcDNA3.1-EC-Cys46GlyLDLR-His plasmid, respectively. Briefly, HEK293 cells were transfected with the plasmid by calcium phosphate method for 24–48 h and selected by geneticin (G-418 sulphate, Gibco, Invitrogen). The LDLr ectodomain was affinity purified using one-step nickel affinity chromatography as described before [26 (link)]. Cys46Gly variant was introduced by oligonucleotide site-directed mutagenesis using QuickChange Lightning mutagenesis kit (Agilent) according to manufacturer’s instructions and using 5’-TAC AAG TGG GTC GGC GAT GGC AGC GC-3’ and 5’-GCG CTG CCA TC GCC GAC CCA CTT GTA-3’ forward and reverse primers, respectively.
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