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39 protocols using py705 stat3

1

Multitarget Immunofluorescence Signaling Assay

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Antibodies to p-ERK1/2, ERK1/2, p-T308-AKT, AKT, p-Y705-STAT3, JAK1 were purchased from Cell Signaling Technology (Beverly, MA, USA). STAT3 and p-T1022-JAK1 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies to HAS2 and C5R1 were purchased from Abcam (Cambridge, UK). 4,6-diamidino-2-phenylindole (DAPI) were purchased form Sigma (St Louis, MO, USA). rh-C5a protein and antibodies to CD105 and C5a were purchased from R&D Systems (Minneapolis, MN, USA). Chemical inhibitors specific to MEK (U0126), PI3K (LY294002), JAK1 (P6) and STAT3 (WP1066) were purchased from Calbiochem (San Diego, CA, USA). Anti-Goat Alexa Fluor 488, anti-mouse Alexa Fluor 546 were purchased from Invitrogen (Carlsbad, CA, USA). Anti-mouse IgG-HRP, anti-goat IgG-HRP and anti-rabbit Ig-HRP were purchased from Santa Cruz biotechnology (Santa Cruz, CA, USA). HA (Low molecular weight; 15-40 kDa) was purchased from R&D systems (Minneapolis, MN, USA).
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2

Liver Tissue Immunohistochemical Analysis

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Liver tissues from human liver cancer patients, TgTM4SF5 FVB/N mice, or C57BL/6 (WT or Tm4sf5−/− KO) mice treated with or without DEN and in the absence or presence of TSAHC were processed for immunohistochemistry. Liver sections were fixed with 3.7% formaldehyde and embedded in paraffin. The fixed liver sections were deparaffinized and rehydrated. Antigen retrieval was performed with heat-induced epitope retrieval (HIER) using sodium citrate buffer (pH 6.0). Quenching and blocking were performed using 3% H2O2 in distilled water and 1% normal goat serum in phosphate-buffered saline (PBS). Antigens were stained using the avidin–biotin complex (ABC) method (VECTASTAIN Elite ABC HRP Kit, Vector) and were detected using 3,3′-diaminobenzidine (DAB) stain (Vector). Antibodies against TM4SF5 [17 (link)], collagen I (Acris Antibodies), pY705STAT3 (Cell Signaling Technology), normal rabbit or mouse IgG, α-SMA (Sigma-Aldrich), α-fetoprotein (AFP), CD34, Ki67, laminins (Abcam), α-l-fucosidase [FUCA (AFU)], and laminin γ2 (Santa Cruz Biotechnology) were used for immunostaining. Ten random images per slide were saved using a digital slide scanner (MoticEasyScan, Motic, British Columbia, Canada). The tissues were also processed with Masson’s trichrome as well as hematoxylin and eosin stains, as previously described [27 (link)].
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3

Immunoblotting of Phosphorylated STAT3

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Cell lysates were prepared in PN lysis buffer (10 mM PIPES, 50 mM NaCl, 150 mM sucrose, 50 mM NaF, 40 mM Na4P2O710H2O, 1 mM Na3VO4, 1% Triton X-100, Complete protease inhibitors (Sigma)). Total protein (30 µg) was separated by SDS-PAGE, and transferred to nitrocellulose using the Trans-Blot Turbo Transfer System (Bio-Rad). Blots were blocked in blocking buffer 5% bovine serum albumin (BSA, Fisher) in TBS-T (TBS-T is 50 mM Tris-Cl, 150 mM NaCl, pH 8 with 0.1% Tween20) for 1 hour at 22 oC, then incubated overnight at 4 oC with primary antibodies diluted in blocking buffer. Blots were further incubated with secondary goat anti-mouse or -rabbit fluorophore-conjugated antibodies (Dylight 800 or Dylight 680, ThermoFisher) in 2% non-fat milk in TBS-T, and scanned on the Licor Odyssey.
The following primary antibodies were used: pY705-STAT3, pS727-STAT3, and STAT3 (Cell Signaling Technologies); and GAPDH (Biolegend). In some experiments, cells were treated with IL-6 at the indicated concentrations and time prior to preparation of cell lysates.
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4

Antibody Detection and Signaling Pathways

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The following primary antibodies were used (dilution 1:1,000 for Western blot, 1:200 for immunofluorescence and flow cytometry): GAPDH (mouse SC-25778; Santa Cruz Biotechnology), GP130 (rabbit SC-656 for Western blot, mouse SC-376280 for immunofluorescence; Santa Cruz Biotechnology; and mouse ab34324 for flow cytometry; Abcam), APLNR (mouse FAB8561R and MAB856; R&D Systems), JAMC (mouse FAB11891A; R&D Systems), STAT3 (rabbit 9132; Cell Signaling), pS727-STAT3 (rabbit 9134; Cell Signaling), pY705-STAT3 (rabbit 9145; Cell Signaling), pS235/S236-S6 (rabbit 2211 for Western blot and rabbit 5316 for flow cytometry; Cell Signaling), pS9-GSK3β (rabbit 9336; Cell Signaling), ELMOD1 (rabbit ab127541; Abcam), RAB5 (rabbit ab218624; Abcam) and RAB7 (rabbit 9367; Cell Signaling). HRP-conjugated secondary antibodies (anti-rabbit, mouse Ig, mouse IgG1, mouse IgG2a, and mouse IgG2b) were purchased from Southern Biotech. Alexa-conjugated secondary antibodies were from Life Technologies. FLAER (Alexa Fluor 488–conjugated proaerolysin) was purchased from Cedarlane, MBCD was from Sigma-Aldrich, and Stattic, ruxolitinib, and filgotinib were all from Selleckchem. [Pyr1]-Apelin-13 was resuspended and aliquoted according to the supplier’s recommendation (Phoenix).
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5

Western Blot Analysis of JAK-STAT Signaling

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Cells were lysed in PN buffer (PN is 10 mM PIPES, 150 mM sucrose, 50 mM NaCl, 50 mM NaF, 40 mM Na4P2O7.10H2O, 1 mM Na3VO4, 1% Triton X-100, and complete protease inhibitors (Sigma, Oakville, ON, Canada)). Total protein (30 µg) was separated by SDS-PAGE, transferred to nitrocellulose, and blots blocked in 5% bovine serum albumin (BSA, ThermoFisher) in TBS-T (TBS-T is 50 mM TrisHCl pH 8, 150 mM NaCl, 0.1% Tween 20) for 1 h at 22 °C, then incubated overnight at 4 °C with primary antibodies diluted in blocking buffer. Blots were then incubated with fluorophore-conjugated goat anti-mouse or -rabbit antibodies (Dylight 680 or 800, ThermoFisher) in 2% non-fat milk in TBS-T, and imaged on the Licor Odyssey (Lincoln, NE, USA).
The following primary antibodies were used: pY705-STAT3, STAT3, pY1034/1035-JAK1, JAK1, pY1008-JAK2, JAK2, pY1054/1055TYK2, TYK2 (Cell Signaling Technologies, Danvers, MA, USA); and GAPDH (Biolegend, San Diego, CA, USA). In some experiments, cells were treated with IL-6, LIF, OSM, or IL-11 (Genscript) at the indicated concentrations and time prior to the preparation of cell lysates.
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6

Immunohistochemical Profiling of JAK-STAT Signaling

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MCS were fixed in 2% buffered formalin overnight, dehydrated, embedded in paraffin and sectioned. Sections were deparaffinized with xylene, boiled in either citrate buffer (IRF9 and STAT3) or EDTA (p-STAT3) and incubated in 0.5% hydrogen peroxide followed by blocking in 5% milk. Primary antibodies were incubated overnight, IRF9 (ab56677) from abcam, P-Y705-STAT3 (#4113) and STAT3 (#9139) from Cell Signaling Technology. Biotinylated secondary anti-mouse antibody was applied for 30 min at room temperature. The specific signal was detected using ABC Vectastain and DAB peroxidase, both from Vector Laboratories. Finally, the sections were counterstained with Mayer’s haematoxylin.
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7

Immunoblotting of Stress-Responsive Proteins

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Proteins were separated by electrophoresis in SDS/PAGE and transferred to nitrocellulose membranes. The membranes were used for the immunodetection of COX-2 (Santa Cruz sc-1745), CHOP (Santa Cruz sc-793), elongation initiation factor 2α (eIF2α, Cell Signaling #5324), P-Y705-STAT3 (Cell Signaling #9131), STAT3 (Cell Signaling #9132), PKM2 (Cell Signaling #3198S), IL-1β (Cell Signaling #12242), histone H3 (abcam ab1791), acetyl-K9-histone H3 (Millipore #4-1003;), P-S10-histone H3 (Millipore #04-817), spliced XBP1 (sXBP1; BioLegend #619501), ATF6 (abcam ab11909), HIF1α (Novus Biologicals NBP1-19779), and P-S52-eIF2α (Invitrogen #44-728G). For immunoblots directed to assay nuclear proteins, the nuclear extracts were obtained by using a nuclear extract kit (Active Motif). Anti-TATA-box-binding protein (Diagenode TBPCSH-100) and anti-histone H3 Ab were used for protein load control.
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8

Mammary Carcinoma Cell Line Stimulation and Protein Analysis

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MDA-MB-231, MDA-MB-453, MDA-MB-468, MCF-7, BT-474 and SK-BR-3 mammary carcinoma cell lines were serum starved in DMEM containing 0.1% bovine serum albumin (BSA, SIGMA) and then stimulated with 10% FBS or 5% WF for the indicated time points.
The preparation of protein lysates and immunoblotting analysis was performed as previously described [33 (link)], except that membranes were blocked with Odyssey Blocking Buffer (Licor, Biosciences) and, following incubation with primary antibodies overnight at 4°C, incubated 1 hour at RT with IR-conjugated (Alexa Fluor 680, Invitrogen or IRDye 800, Rockland) secondary antibodies for infrared detection (Odyssey Infrared Detection System, Licor).
Primary antibodies directed against AKT (sc-1618), ERK1 (sc-94), STAT3 (sc-482), Fibrillarin (sc-25397) and Vinculin (sc-7694) were purchased from Santa Cruz Biotechnology, Inc.; pT202/204 ERK1/2 (#9101), pS473 AKT (#4060), pY705STAT3 (#9131) were purchased from Cell Signaling; Tubulin (#T9026) was purchased from SIGMA; Cyclin D1 (#04-1151) and Bcl2 (#OP60) were purchased from Millipore; Grb2 was purchased from BD Transduction Laboratories (#610112).
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9

Western Blot Analysis of Pluripotency Factors

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Cells were lysed in RIPA buffer (Sigma) containing Complete-ULTRA protease-inhibitor and PhoStop phosphatase-inhibitor cocktails (Roche), and sonicated with Bioruptor200 (Diagenode) at high frequency, alternating 30 s on/off for 3 min. SDS-PAGE electrophoresis was performed using Bolt 10% Bis-Tris Plus gels (ThermoFisher) in a Novex MiniCell (ThermoFisher). Protein transfer was performed using the semi-dry iBlot2 system (ThermoFisher) and iBlot Transfer Stacks (ThermoFisher). The following primary antibodies were used: Esrrb (1:1000, mouse mAb, Perseus Proteomics); Klf2 (kind gifts from Huck-Hui Ng; 1:500, rabbit serum, Yeo et al., 2014 (link); and Hitoshi Niwa (1:1000, mouse mAb; Yamane et al., 2018 ); Oct4 (1:1000, rabbit mAb, Cell Signaling); P-Y705-Stat3 (1:1000, rabbit mAb, Cell Signaling); αTubulin (1:10000, mouse mAb, Abcam). Detection was achieved using HRP-linked secondary antibodies at 1:10000 against the appropriate species (GE Healthcare) and ECL Plus Western Blotting Detection System (GE Healthcare).
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10

Antibody-based Protein Expression Analysis

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Antibodies to c-Myc (sc-7274), cyclin D1 (sc-753), ErbB-3 (sc-285), Lyn A/B (sc-764), Fyn (sc-16), Src2 (sc-18), VEGF-A (sc-53462), E2A.E12 (sc-349), and ZEB1(sc-10572) (Santa Cruz Biotechnology), p27Kip1 (BD-Pharmingen 554069), ALDH1 (BD, 661194), Stat3 (BD-Transduction Laboratories, S21320), Twist1/2 (Gene Tex, GTX127310), pY705-Stat3 (Cell Signaling Technology, #9131), Snail-1 (Cell Signaling Technology, LF062), CK5 (ABCAM, ab52635), pY418-Src (Invitrogen, 44660G), GAPDH (MAB374) and MMP9 (AB19016) (Millipore), PARP (Biomol, SA-249 clone C-2_10), β-actin (A5441), TAZ (HPA007415), and hydrocortisone were from Sigma-Aldrich, and CD44 (clone HP 2/9) was a gitf from Dr. F. Sanchez-Madrid (University Hospital La Princesa, UAM) [17 (link)], MatrigelTM (Corning). Secondary horseradish peroxidase-conjugated antibodies, and B27 (Life Technologies). EGF, and bFGF (PeproTech EC Ltd). Fetal Calf Serum (FCS), Acrylamide/Bisacrylamide, SDS and ammonium persulfate (Bio-Rad Laboratories). ECL (GE Healthcare Biosciences). BCA protein assay (Thermo Scientific).
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