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6 protocols using anti cd3 allophycocyanin

1

Immunophenotyping of B Cell Subsets

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Fluorescence-activated cell sorting analysis was performed using a BD LSRFortessa™ (BD Biosciences, San Jose, CA). The following antibodies were used to classify cells: anti-CD19-fluorescein isothiocyanate (FITC) (Miltenyi Biotec, Friedrich Gladbach, Germany), anti-CD3-allophycocyanin (APC), anti-CD4-APC, anti-CD4-phycoerythrin (PE), anti-CD24-peridinin chlorophyll protein complex-Cy 5.5 (PerCP Cy5.5), anti-CD25-APC, anti-CD27-PE, anti-CD39- brilliant violet 421 (BV421), anti-CD45-V500, anti-CD73-APC, anti-IFN-γ-BV421, and anti-IL-10-BV421 (all from BD PharMingen, Franklin Lakes, NJ), anti-CD80-APC, anti-CD86-APC monoclonal antibody (mAb) (Biolegend, San Diego, CA), Annexin V- FITC (BD PharMingen), and DAPI (Cell Biolabs, San Diego, CA). The CD19+CD24hiCD27+ B cell subset was sorted using a Moflo XDP cell sorter (Beckman Coulter, Brea, CA) with 90% to 95% purities.
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2

Cytokine Profiling of Activated Splenocytes

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Splenocytes were obtained from mice and incubated at 37 °C for 6 h in 48-well plates coated with anti-CD3 and anti-CD28 antibodies (1 mg ml−1 each; eBioscience, San Diego, CA, USA). Cells were stained for 30 min at 4 °C with surface-specific antibodies (anti-CD3-allophycocyanin, anti-CD4-FITC and anti-CD8-PE–Cy5; BD Biosciences, Franklin Lakes, NJ, USA) and then fixed and permeablized through incubation for 10 min in 4% paraformaldehyde at room temperature. Cells were incubated for 30 min at room temperature with antibodies specific for candidate cytokines (anti-IFN-γ–PE, -IL-17–PE, -IL-4–PE and -IL-10-PE; BD Biosciences) and then analyzed on a FACSCalibur flow cytometer (BD Biosciences) using the CellQuest software (CellQuest, Largo, FL, USA).
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3

Multiparametric T cell phenotyping

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CD4+, CD8+ and activated CD4+CD38+ human leukocyte antigen (HLA)-DR+ T cells in the peripheral blood were measured by flow cytometry (FACSCantoII; Becton, Dickinson and Company) using BD FACSCanto II System Software Upgrade (v 3.0); Becton, Dickinson and Company. The cell counts for CD3+CD4+, CD3+CD8+ and activated CD3+CD4+CD38+HLA-DR+ T cells were determined by a five-color strategy using anti-CD3-allophycocyanin, anti-CD4-fluorescein isothiocyanate, anti-CD8-phycoerythrin-Cy7, anti-CD38-phycoerythrin, and anti-HLA-DR-Peridinin Chlorophyll Protein Complex-Cy5.5 (Becton, Dickinson and Company). Cell staining was performed according to the manufacturer's instructions.
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4

Multiparametric Flow Cytometry Analysis of NK Cells

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MNCs were stained with anti-CD3 allophycocyanin (APC) and anti-CD56 fluorescein isothiocyanate- (FITC-) conjugated mouse anti-human monoclonal antibodies, from Becton-Dickinson (BD Pharmingen, San Diego, CA, USA) as previously described [4 (link)]. Intracellular perforin and granzyme B expressions in NK cells were investigated after permeabilization of the cell membrane with a Cytofix/Cytoperm kit (BD Pharmingen, San Diego, CA, USA) using PE or PerCP-conjugated anti-perforin or anti-granzyme B (BD Pharmingen, San Diego, CA, USA), according to the manufacturers' instructions.
The fluorescent staining was analyzed on a FACSCalibur (BD Biosciences) flow cytometer. Appropriate fluorochrome-conjugated isotype-matched controls were used for background staining. Each analysis was performed using at least 10,000 cells that were gated in the viable lymphocyte population, as determined by forward scatter versus side scatter properties. The lymphocytes were gated to identify CD3+and CD3 cells for further analysis of the expression levels of CD56. The NK cells were defined as CD3 and CD56+. As shown in Figure 1(a), the two subpopulations of NK cells, CD56dim and CD56bright NK subsets, could be further defined according to the density of expression of CD56.
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5

Flow Cytometry Immunophenotyping Protocol

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The following fluorescence-labeled monoclonal antibodies against cell-surface antigens were used: fluorescein isothiocyanate-anti-CD107a, peridinin chlorophyll-Cy5.5-anti-NK1.1, and allophycocyanin-anti-CD3 were purchased from BD Biosciences (San Jose, CA, USA); phycoerythrin (PE)-CY7-anti-IFN-γ was purchased from eBioscience (San Diego, CA, USA); anti-PE microbeads were purchased from Miltenyi Biotec (Bergisch Gladbach, NRW, Germany); and the PE-anti-CD1d tetramer was obtained from the National Institutes of Health Tetramer Core Facility (Atlanta, GA, USA). The cells were stained with the indicated antibodies and analyzed using an FACSCalibur flow cytometer (BD Biosciences, NJ, USA) and FlowJo 7.6.1 software.
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6

Characterizing Engineered CAR-T Cells

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Flow cytometry was used to detect CAR expression ratio, CD4:CD8 ratio, differentiation status of the manufactured CAR-T cells, and CAR-T cell levels in peripheral blood. In brief, CAR-T cells (1 × 106) were suspended in 100 μL of Dulbecco’s phosphate-buffered saline (DPBS; Thermo Fisher Scientific) and incubated with fluorescent molecule-labeled antibodies for 30 min at 25°C. The cells were analyzed using a flow cytometer (NOVOCYTE 2060R, ACEA Biosciences, San Diego, CA, USA) after washing DPBS twice. Allophycocyanin-anti-CD3 (BD Biosciences, Franklin Lakes, NJ, USA) and fluorescein isothiocyanate (FITC)-anti-CAR (Immunochina, Beijing, China) that recognized the scFv fragment were used to detect CAR-T cells. The specificity of FITC-anti-CAR was detected and was shown in Figure S4. Phycoerythrin (PE)-anti-CD4 and FITC-anti-CD8 (BD Biosciences) were used to determine the CD4:CD8 ratio. Allophycocyanin-anti-CD45RA and PE-anti-CD62L (BioLegend, San Diego, CA, USA) were used to evaluate the differentiation status.
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