The largest database of trusted experimental protocols

6 protocols using acridine orange

1

Cell Culture and Cytotoxicity Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dulbecco’s Modified Eagle’s Medium (DMEM) was purchased from Fisher Scientific (Waltham, MA, USA). Penicillin, streptomycin, PI, RNase, MTT and TMZ were purchased from Sigma-Aldrich. TMZ was dissolved in dimethylsulfoxide (DMSO; Sigma Chemicals Co., Perth, Mexico) for assays. Acridine orange was obtained from Polysciences (Warrington, PA, USA).
+ Open protocol
+ Expand
2

Fluorescent Dyes for Cell Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Unless specifically stated, the chemicals used in this study were purchased from Roth (Karlsruhe, Germany) and Merck (Darmstadt, Germany) and were of analytical grade. Acridine orange was obtained from Polysciences Europe GmbH (Eppelheim, Germany) and Merocyanin 540 (M540) and YoPro-1 from Molecular Probes (Leiden, the Netherlands). The fluorescent dyes fluorescein-isothiocyanate conjugated peanut agglutinin (FITC-PNA) and Pisum sativum agglutinin (FITC-PSA) were purchased from Axxora (Lörrach, Germany). Propidium iodide (PI) and Rhodamine 123 (R123) were obtained from Sigma-Aldrich (Steinheim, Germany).
+ Open protocol
+ Expand
3

Hesperetin's Autophagy Regulation in U937 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Acidic intracellular compartments were evaluated using acidic vesicular organelle (AVO) staining. U937 cell staining was performed as previously described [11 (link),12 (link),13 (link)]. To examine the degree of autophagy in U937 cells, the cells were treated with hesperetin (0, 12.5, 25, 50, and 100 µM) for 24 h. The cell pellets were washed twice with cold PBS and centrifuged at 1200 rpm for 5 min at 4 °C. Acridine orange (Polysciences, Warrington, PA, USA) was added at a final concentration of 1 mg/mL for 15 min at 37 °C in the dark. The FACSCalibur system (Becton Dickinson) was used to analyze the autophagic cells. Cell viability assay was used to evaluate the inhibition of cell proliferation potentials of 3-Methyladenine (3-MA) and bafilomycin A1 (Baf-A1). Also, U937 cells were seeded in 96-well plates (4 × 104 cells/well) and incubated at 37 °C for 24 h, pretreated with or without 3-MA (2 mmol/L) for 2 h, and then stimulated with various concentrations of hesperetin (0, 25, 50, and 100 µM). The wells without 3-MA or Baf-A1 and hesperetin addition were used as controls. Each concentration was replicated three times. Following incubation for 24 h, 10 µL of CCK-8 (Sigma-Aldrich) was added to each well, and the cells were reincubated at 37 °C for 2 h. Absorbance was measured using a multifunctional microplate reader (Molecular Devices, Sunnyvale, CA, USA) at 450 nm.
+ Open protocol
+ Expand
4

Quantifying Autophagy Induction in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Autophagy is the process of sequestrating cytoplasmic proteins and organelles into the lysosomal component and is characterized by development of acid vesicular organelles (AVOs). To detect and quantify AVOs in IR-treated cells, we performed vital staining with acridine orange (Polysciences, Warrington, PA, USA) as previously described. U2OS and KHOS/NP cells were stained with 1.0 μg/ml acridine orange for 15 min at room temperature and processed for flow cytometry using the FACScan cytometer and analyzed with CellQuest software (Becton Dickinson).
+ Open protocol
+ Expand
5

Evaluating Oxidative DNA Damage

Check if the same lab product or an alternative is used in the 5 most similar protocols
All the chemicals were acquired from Merck (Madrid, Spain) except for monoclonal anti-8-OHdG antibody (mouse anti-8-OHdG monoclonal antibody DNA/RNA damage antibody-15A, NB110-96878, Novus Biologicals®, Lille, France), Alexa Fluor™ 488 goat anti-mouse antibody (Fisher Scientific, Madrid, Spain), Hoechst 33342 (ThermoFisher Scientific, Madrid, Spain) and acridine orange (Polysciences, Inc., Warrington, PA, USA). Flow cytometry consumables, equipment, and software were purchased from Beckman Coulter (Fulerton, CA, USA). The freezer extender, Biladyl®, was purchased from Minitube (Tiefenbach, Germany).
+ Open protocol
+ Expand
6

Sperm Chromatin Structure Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The genetic integrity of the spermatozoan was assessed by the sperm chromatin structure assay (SCSA). The SCSA provides evaluation of 5000 cells and detection of damaged sperm DNA in sperm nuclei using flow cytometry of acridine orange-stained sperm samples (Evenson, 2013 (link)). Cell suspensions from left caudal epididymis were incubated (5 min, 37°C), filtered through a 70-μm sterile cell strainer to remove the tissues/debris to form uniform sperm cells, and centrifuged (2000 rcf, 3 min, 37°C). The supernatant was discarded; sperm cells were resuspended in 100 μl M16 medium and stored in liquid nitrogen until further processing by SCSA Diagnostics (Brookings, SD). Briefly, samples prepared according to Evenson (2013) (link) protocol were thawed and prepared up to 1–2 × 106 sperm/ml with Tris-Na-EDTA (TNE) buffer. An aliquot of 200 μl of this sperm suspension was mixed with 400 μl of acid detergent solution and incubated for 30 s. After incubation, 1.2 ml of acridine orange (Polysciences, Inc., Warrington, PA) staining solution was added to the sample and measured by flow cytometry. Each sample was assessed in duplicate.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!