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6 protocols using ab15011

1

Western Blot Analysis of EV Proteins

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EVs were heated for 5 min at 95°C with reducing Laemmli buffer and amounts corresponding to 100 μL plasma were loaded per lane of a 10% SDS-PAGE gel. After separation, the proteins were transferred to nitrocellulose membranes, which were subsequently blocked using 10% (w/v) fat-free milk. Membranes were incubated with primary antibodies against TSG101 (Abcam, #ab15011, 1:1000 dilution), Calnexin (Abcam, #ab22595, 1:2000 dilution) and PDCD6IP/ALIX (Santa Cruz Biotechnology, #sc-166952, 1:1000 dilution) overnight at +4˚C. After washing in TBST, membranes were incubated for 1h at room temperature with anti-rabbit IgG, F(ab’)2-HRP (Santa Cruz Biotechnology, #sc-3837, 1:2000 dilution), goat anti-mouse m-IgG BP-HRP (Santa Cruz Biotechnology, #sc-516102, 1:2000 dilution), or HRP-conjugated antibody against CD63 (Novus Biologicals, #NBP2-34779H, 1:2000 dilution). After washing in TBST, immunoreactive bands were visualized using Amersham™ ECL Select™ Western Blotting Detection Reagent kit (GE HealthCare Lifesciences) and pictures were taken using a Nikon d610 dSLR body (Nikon) with Sigma 35mm f/1.4 DG HSM Art lens (Sigma).
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2

Immunofluorescence Assay for HOXA1, Nrf2, and HO-1

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A549 and NCI-H1299 cells were maintained in culture dishes. Fixation of the cells was implemented with 4% paraformaldehyde for 15 min. Following being washed by PBS plus 0.05% Tween-20, they were permeabilized utilizing 0.3% Triton X-100 for 5 min, along with blockage by 1% BSA for 30 min as well as incubation with HOXA1 (1 : 100; ab72591; Abcam, USA), Nrf2 (1 : 100; 16396-1-AP; Proteintech, China), and HO-1 (1 : 100; 27282-1-AP; Proteintech, China) antibodies at 4°C overnight, followed by Alexa Fluor® 488 (1 : 100; ab150077; Abcam, USA) or Alexa Fluor® 647 (1 : 100; ab15011; Abcam, USA) antibodies. Nucleus was stained with DAPI. Immunofluorescence images were acquired with a confocal microscope (Olympus, Japan).
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3

EV Protein Characterization by Western Blot

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EVs were lysed in RIPA buffer (50 mM Tris, pH 8.0, 150 mL NaCl, 1% Triton X-100, 0.5% Na deoxycholate, 0.1% SDS). Protein concentration was measured using PierceTM BCA Protein Assay Kit (Thermo Fisher Scientific). LNCaP cells (ATCC, Manassas, VA, United States) were used as a positive control. Equal fraction (one fifth) of the EV proteins and 10 µg of cellular proteins were separated by 10% SDS-PAGE, transferred to nitrocellulose membranes and blocked using 10% (w/v) fat-free milk. Membranes were incubated with primary antibodies against TSG101 (Abcam, #ab15011, 1:1000 dilution), Calnexin (Abcam, #ab22595, 1:2000 dilution), CD63 (Santa Cruz Biotechnology, #sc-5275, 1:500 dilution) and PDCD6IP/ALIX (Santa Cruz Biotechnology, # sc-166952, 1:1000 dilution). Membranes were washed and incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG, F(ab’)2-HRP: (Santa Cruz Biotechnology, #sc-3837) or goat anti-mouse m-IgGκ BP-HRP (Santa Cruz Biotechnology, #sc-516102) in 1:2000 dilution. Immunoreactive bands were visualized using Western Blotting Detection Reagent kit (GE Healthcare Lifesciences) and pictures were taking using a Nikon d610 dSLR body (Nikon) with Sigma 35 mm f/1.4 DG HSM Art lens (Sigma).
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4

Extracellular Vesicle Protein Profiling

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Urinary EVs were heated for 5 min at 95˚aC with reducing Laemmli buffer and amounts corresponding to 1.5ml urine were loaded per each lane of a 10% SDS-PAGE gel. LNCaP cell lysate, prepared in 1x RIPA and heated with reducing Laemmli prior to loading, was used as a control (10 µg proteins per lane). PageRuler™ Prestained Protein Ladder, 10 to 180 kDa (ThermoFisher Scientific) was loaded onto each gel for assessment of protein molecular weighs. After separation by SDS-PAGE, the proteins were transferred to Amersham Protran Supported 0.45 NC membranes (Merck Millipore), which were subsequently blocked using 10% (w/v) low-fat milk. Membranes were incubated with primary antibodies against TSG101 (Abcam, #ab15011, 1:1000 dilution), Calnexin (Abcam, #ab22595, 1:2000 dilution), or CD63 (Sino Biological, # 11271-T16, 1:300 dilution) overnight at + 4 ˚C. Membranes were washed in TBST and incubated for 1 h at room temperature with anti-rabbit IgG, F(ab’)2-HRP (Santa Cruz, #sc-3837, 1:2000 dilution), or goat anti-mouse m-IgG BP-HRP (Santa Cruz, # sc-516,102, 1:2000 dilution). After washing again in TBST, immunoreactive bands were visualized using Western Blotting Detection Reagent kit (GE HealthCare), and pictures were taken using a Nikon d610 dSLR body (Nikon) with Sigma 35 mm f/1.4 DG HSM Art lens (Sigma).
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5

Cryosectioning and Immunofluorescence Staining

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Tissue samples were decalcified in 10 mM ethylene diamine tetraacetic acid (EDTA) for 3 weeks, then dehydrated overnight with 15% and 30% sucrose, respectively, and finally embedded with optimal cutting temperature compound (OCT) (Sakura, Japan). Tissue sections of 10-μm thickness were prepared with a Leica cryostat. Cell samples were fixed with 4% paraformaldehyde for 15 min, and then permeabilized with 0.3% Triton X-100 for 10 minutes and blocking with 3% BSA for 1 hour. Tissue sections or cells were incubated overnight with primary antibody at 4 °C. The primary antibodies used in this experiment are as follows: CD31(Abcam, ab182981, 1:200), CGRP (Abcam, ab36001, 1:200), Runx2 (Abcam, ab192256, 1:200), Sema3A (Abcam, ab23393, 1:200), Rock2 (Huabio, ER1706-48, 1:200), Drp1 (Abcam, ab184247, 1:200), and Mfn2 (Huabio, ER1802-23, 1:200). After washing the primary antibody, samples was incubated in the secondary antibodies for 2 hours. The secondary antibodies used are as follows: goat anti-rabbit Alexa Fluor 555 (Huanio, HA1123, 1:200), goat anti-rabbit Alexa Fluor 647 (Huabio, HA1123, 1:200), donkey anti-goat Alexa Fluor 555 (Abcam, ab15011). Immunofluorescence images were collected by a Nikon confocal microscope (Nikkon, N-Strom & A1, Japan).
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6

Immunohistochemical Analysis of Surfactant Proteins

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The cultured embryonic lungs were immediately fixed in 4% formaldehyde, dehydrated and embedded in paraffin. Sections (5-6 μm) were prepared and deparaffinised. The sections were treated with 3% H2O2 and the antigen retrieval was achieved in 10 mM citrate buffer (PH 6.0). Immunohistochemistry of surfactant proteins SP-C and SP-B was performed using primary antibody Goat anti-SftpC (1:200, Santa Cruz, (C-19): sc-7705) and Rabbit anti-Pro SftpB (1:600, Abcam, ab15011). A Streptavidin-HRP conjugated Rabbit anti-Goat IgG anti-HRP (1:200, Bethyl, A50-100p) and Goat anti-Rabbit HRP (1:100, Abcam, ab97051) secondary antibody and the DAB Substrate Kit (DAB Substrate Kit, Cell Signaling, #8059) was used for detection. The nuclear counter stain was performed using haematoxylin.
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