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12 protocols using tripure reagent kit

1

Gene Expression Analysis in Macrophages

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Total RNA was extracted with TRIpure Reagent kit (Takara, China). 500 ng of total RNA was reverse transcribed using M-MLV reverse transcriptase kit (Roche). Primers of CD11c, TNFα, CD206, CD163, MC5R, IL-6, MCP-1, Leptin, Foxo1, Foxo3a, Foxo4, Foxo6, Caspase3 and GAPDH were designed as Table 1 and synthesized by Invitrogen. Quantitative PCR was performed in 20 μL reaction system containing specific primers, SYBR Premix EX Taq (Takara, China), cDNA and ddH2O. The level of mRNA was normalized by GAPDH. The relative mRNA levels of genes were analyzed with the method of 2-ΔΔCt.
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2

Quantitative Analysis of Gene Expression

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Total RNA was extracted with TRIpure Reagent kit (Takara, Dalian, China) and 500 ng of total RNA was reverse transcribed using the Roche reverse transcriptase kit (Roche, Shanghai, China). Primers for Mark4, Beclin1, ATG7, P62, UCP1, PGC1α, Prdm16, Cidea, GAPDH, and β-actin were synthesized by Shanghai Sangon Ltd. (Shanghai, China). GAPDH and β-actin were used as internal control in PCR amplification. Quantitative PCR was performed in 25 μL reactions containing specific primers and SYBR Premix EX Taq (Takara, Dalian, China). The levels of mRNAs were normalized to β-actin. The expression of genes was analyzed by method of 2−∆∆Ct.
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3

Quantifying Gene Expression in Adipose Tissues

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Total RNA was extracted from adipose tissues or adipocytes using TRIpure Reagent kit (Takara) according to the manufacturer's instructions. In all, 500 ng of total RNA was reverse transcribed using M-MLV reverse transcriptase kit (Takara). Primers were synthesized by Invitrogen (Shanghai, China). Real-time PCR was carried out in StepOnePlusTM System (Applied Biosystems, Carlsbad, CA, USA) with SYBR Green Master Mix (Vazyme, Nanjing, China). The 2−△△Ct method was used to quantitate the relative changes in gene expression normalized to β-actin.
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4

Quantitative RNA Expression Analysis

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Total RNA of eWAT or adipocytes were extracted with TRIpure Reagent kit (Takara, China) according to previous study (41 (link)). 500 ng of total RNA was reverse transcribed using M-MLV reverse transcriptase kit (Invitrogen, USA, 28025013). Primers were synthesized by Invitrogen (China). Quantitative PCR was performed in 25 µL reaction system containing specific primers and AceQ qPCR SYBR Green Master Mix (Vazyme, China, Q111-02). Amplification was performed in the ABI StepOne Plus™ RT-PCR System (CA, USA). The levels of mRNA were normalized in relevance to GAPDH. The expression of genes was analyzed by method of 2−ΔΔCt.
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5

Adipose Tissue RNA Extraction and qPCR

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Total RNA from adipose tissues and cells were extracted with TRIpure Reagent kit (Takara, China). 400 ng of total RNA was reverse transcribed using M-MLV reverse transcriptase kit (Takara, China). Primers were synthesized by Shanghai Sangon Ltd (Shanghai, China). Quantitative PCR was performed in 25 μL reaction system containing specific primers and SYBR Premix EX Taq (Takara, Dalian, China). The levels of mRNA were normalized using β-actin. The expression of genes was analyzed by method of 2−ΔΔCt.
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6

Quantitative Real-Time PCR Analysis

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Total RNA was extracted from eWAT or adipocytes with TRIpure Reagent kit (Takara, Dalian, China). Reverse transcription of 500 ng total RNA using M-MLV reverse transcription kit (Takara, Dalian, China). Moreover, primers were synthesized by Invitrogen (Invitrogen, Shanghai, China). Further quantitative PCR was performed in 25-μL reaction system containing specific primers and AceQ qPCR SYBR Green Master Mix (Vazyme, Nanjing, China). Amplification was performed in the ABI Step One Plus™ RT-PCR System (ABI, Carlsbad, CA, USA). The levels of mRNA were normalized in relevance to GAPDH. Moreover, the expression of genes was analyzed by method of 2−ΔΔCt, ΔΔ = (CTTarget Gene − CTGAPDH) T − (CTTarget Gene − CTGAPDH) C.
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7

Transcriptome Analysis via qRT-PCR

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Total RNA was isolated using TRIpure Reagent kit (Takara, Dalian, China) according to the manufacturer’s instructions. cDNA was generated by using the High Capacity cDNA Reverse Transcription Kit (Takara, Dalian, China). The process for qRT-PCR was performed as described previously [60 (link)].
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8

RNA Extraction and Expression Analysis

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Total RNA was extracted with TRIpure Reagent kit (Takara, China). 500 ng of total RNA was reverse transcribed using M-MLV reverse transcriptase kit (Takara, China). Primers were designed as Table 1 in Supplementary Data synthesized by Invitrogen (Shanghai, China). Quantitative PCR was performed in 20 μL reaction system containing specific primers, cDNA and SYBR Premix EX Taq (Takara, China). The levels of mRNA were normalized using β-actin. The expressions of genes were analyzed by the method of 2−ΔΔCt.
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9

Quantification of Gene Expression in Adipose Tissues

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Total RNA was extracted from adipose tissues (iWAT and iBAT) or white adipocytes using TRIpure Reagent kit (Takara, Dalian, China) according to the manufacturer's instructions. 500 ng of total RNA was reverse transcribed using M-MLV reverse transcriptase kit (Takara, China). Primers were designed by Premier 5.0 and were synthesized by Invitrogen (Table 1, Shanghai, China). Real-time PCR amplification was performed in 25 μL reaction system containing specific primers and SYBR Premix (Vazyme, Nanjing, China) under specific amplification conditions. Amplification reactions were carried out in the ABI StepOne plus™ RT-PCR System (Carlsbad, CA). The levels of mRNA were normalized to Gapdh. 2−ΔΔCt method was used to analyze the data.
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10

Quantification of Gene Expression

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On the basis of a previously described method,36 the extraction and reverse transcription of total RNA (500 ng) from ileum, eWAT, and liver were performed (TRIpure Reagent kit and M-MLV reverse transcriptase kit; Takara, Dalian, China), respectively. Primers were designed in accordance with mouse sequence and passed to Invitrogen (Shanghai, China) to synthesize. Quantitative PCR was performed in 25 μL reaction system containing specific primers and SYBR Premix (Vazyme Biotech, Nanjing, China). Amplification was performed in the ABI StepOne plus RT-PCR System (Carlsbad, CA). The levels of mRNA were normalized in relevance to Gapdh and Rpo A (Figure 8E). The relative RNA expressions were analyzed using the method of 2−ΔΔCt.
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