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Clampfit version 10

Manufactured by Molecular Devices
Sourced in United States

Clampfit version 10.2 is a data analysis software tool designed for electrophysiology research. It provides users with the ability to analyze and manage data acquired from various electrophysiology recording systems.

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15 protocols using clampfit version 10

1

Hippocampal LTP Induction via Theta Burst Stimulation

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Field excitatory postsynaptic potentials (fEPSPs) were recorded in the stratum radiatum of the hippocampal CA1 region by means of a glass microelectrode filled with 3 M NaCl (resistance 1–4 MΩ). The Schaffer collateral pathway was stimulated with concentric bipolar electrodes (Frederick Haer Co, Bowdoinham, ME, USA). After an optimal fEPSP wave was found, an input–output (I/O) curve was established with stimulating pulses (0.2 ms duration) at different intensities. Baseline fEPSP was recorded at 0.033 Hz with a stimulating strength adjusted to yield about 40% of the maximal response. After baseline responses had stably lasted for at least 30 min, LTP was induced by delivering theta burst stimuli (TBS; four trains of 10 bursts of four stimuli with 20 s, 200 ms, and 10 ms intervals between trains, bursts, and stimuli, respectively). The electrophysiological data was acquired with a multiclamp 700 A amplifier (Axon instruments, Molecular Devices, USA), filtered at 0.1–5 KHz, digitized at 10 KHz, and analyzed with Clampfit version 10.0 (Axon Instruments, USA). The analyzed data was further processed with Origin 5.1 (Microcal Software Northampton, MA).
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2

Isolation and Recording of L-type Ca2+ Currents

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In voltage-clamp experiments, Ca2+ currents were recorded using an extracellular solution containing 10 mM CaCl2, 5 mM glucose, 120 mM tetraethylammonium chloride, 10 mM Hepes, 1 mM MgCl2, 0.1 mM ethylene glycol-bis-b-aminoethyl ether-N,N,N',N'-tetraacetic acid (EGTA), pH 7.4. The patch pipette was filled with 130 mM CsCl, 1 mM EGTA, 0.5 mM MgCl2, 10 mM Hepes, pH 7.4. During recordings, the bath contained 2 μM tetrodotoxin, to prevent Na+ current activation. The electrophysiological recordings were carried out at room temperature using the whole-cell configuration of the patch-clamp technique. Stimulation, acquisition, and data analysis were performed with the pCLAMP 9.0 and Clampfit version 10.0 software (Axon Instruments, Burlingame, USA). The linear components of leak and capacitive currents were canceled using the P/N4 method. The patch pipettes had resistances of 3–6 MΩ. To abolish the T-type contribution and select L-type Ca2+ currents, the cells were clamped from the holding potential of −90 to −30 mV for 750 ms, then a ramp was applied from −60 to +60 mV, with 10 mV increments and of 500 ms duration. A sampling interval of 50 kHz (20 μs/point) was used, and the currents were filtered at 2 kHz (Bessel filter).
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3

Reconstitution of TMEM120A protein in GUVs

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The purified HsTMEM120A protein was reconstituted into the membrane of GUVs by using a mixture of cholesterol:DPhPC:azolectin (w:w:w) at a ratio of 1:5:17 or 1:10:15 with a protein:azolectin ratio of 1:85 (w/w) through a modified sucrose method (Battle et al., 2009 (link)). The bath and pipette solutions contained 500 mM NaCl, 10 mM CaCl2, and 10 mM HEPES-NaOH (pH 7.4). Patch pipettes with resistances of 5–6 MΩ were used, and the patch resistance was increased to ~2 GΩ after the pipette was sealed tightly with the GUV membrane. A negative pressure was applied through a Suction Control Pro pump (Nanion) with a stepwise or linear protocol while data were recorded at a constant holding potential. The data were acquired at 50 kHz with a 0.5-kHz filter and a HumBug 50/60 Hz Noise Eliminator (Quest Scientific), using an EPC-10 amplifier (HEKA). The Clampfit Version 10.0 (Axon Instruments) was used for data analysis and Igor Pro 6.37A (WaveMetrics; RRID:SCR_000325) was used for making the graphs. The sample size represents the number of patches tested in the inside-out recordings. The number of patches tested was determined based on the observation of channel activities upon application of the negative pressure. Samples were grouped based on the proteins of interest reconstituted into the GUVs. The investigators were not blinded to group allocation.
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4

Electrophysiological Data Analysis

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The data obtained were processed using Clampfit version 10.4 (Axon Instruments) and Origin version 8.0 (Micocal Software), and the measured data are expressed as mean ± SD. Multigroup comparisons were performed using one-way analysis of variance (ANOVA), and continuous univariate data were analyzed using a Student's t test. Steady-state activation and inactivation curves were fit with the Boltzmann function to obtain slope factor (k) and midpoint (V1/2 ). The time-dependent recovery from the inactivation was fit using a first-order exponential function. p values less than 0.05 were considered statistically significant.
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5

Electrophysiology Characterization of ICa-L and ITi

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Electrophysiology experiments were used to study the relationship between ICa-L or ITi and the action potential. Currents (ICa-L and ITi) and action potentials were recorded using the whole-cell patch-clamp technique with an Axon-700B amplifier (Axon Instruments). The action potentials and the action potential amplitudes were measured under the current clamp mode with 2.5 ms/1 nA depolarizing pulses. The whole-cell currents including ICa-L and ITi were obtained under the voltage clamp mode. ICa-L was recorded with a 10 mV voltage step from a holding potential of -40 mV to +70 mV. ITi was recorded with an increment of 10 mV voltage potential from -100 mV to +10 mV. These recordings were used to create the current–voltage relationship, steady state activation (SSA), or steady-state inactivation (SSI) curves (SSA left shift indicates the activation of ICa-L and SSI right shift indicates the inactivation of ICa-L). The electrophysiology data were analyzed by Clampfit version 10.4 (Axon Instruments) and Origin (Microcal Software). Triggered activity was defined as an unstimulated action potential arising from a DAD or an EAD.
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6

Neuronal Resting Potential Analysis

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Off-line analysis was performed using Clampfit version 10.4 (Axon Instruments). Resting membrane potential (RMP) was the low-pass readout of the electrode amplifier and was not corrected for liquid junction potential (~ 12 mV) after terminating the recording. The membrane potential was measured immediately after establishing the whole cell configuration. Only neurons that had a resting membrane potential more negative than − 60 mV were further investigated.
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7

Offline Electrophysiology Data Analysis

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For electrophysiology, data analysis and offline leak subtraction were completed in Clampfit, version 10.4 (Axon Instruments). Statistical analysis and graphs were completed using GraphPad Prism 7 software. Data are plotted as mean ± SEM, and numbers in parentheses reflect the number of cells/animals (n). Normality distribution was verified using the D’Agostino-Pearson test. For Gaussian data, a paired Student’s t test was used to compare data before and after drug treatment and unpaired 2-tailed Student’s t test was used to assess statistical significance when comparing 2 means. One-way ANOVA followed by Tukey’s post hoc test was used to compare 3 groups, and 2-way ANOVA followed by Tukey’s post hoc test was used for multiple comparisons. For non-Gaussian data, the nonparametric Mann Whitney U unpaired test was used to assess statistical significance when comparing 2 means, and Kruskal-Wallis followed by Tukey’s post hoc test was used to compare 3 groups. A P value of less than 0.05 was considered significant.
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8

Zebrafish Larval Optic Tectum EEG Analysis

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We performed EEG analysis on larval optic tecta as described by Afrikanova et al. [2 (link)]. Epileptiform-like discharges were detected by inserting a glass electrode filled with artificial cerebrospinal fluid (124 mM NaCl, 2 mM KCl, 2 mM MgSO4, 2 Mm CaCl2, 1.25 mM KH2PO4, 26 mM NaHCO3, 10 mM glucose) into the optic tectum of individual 4 dpf zebrafish larvae for 20 min (MultiClamp 700B amplifier, Digidata 1550 digitizer, Axon instruments, USA). The larvae were restrained with the aid of a thin layer of 2% low melting point agarose. The Clampfit version 10.6.2 software (Molecular Devices Corporation, USA) was used for processing the EEG recordings. The data were analysed manually by a highly trained observer, blind to treatment group.
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9

Zebrafish Larval EEG for Epileptiform Discharges

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The EEG recordings were performed as previously described by Afrikanova et al. [45 (link)]. Epileptiform-like discharges were detected by inserting a glass electrode filled with artificial cerebrospinal fluid (124 mM NaCl, 2 mM KCl, 2 mM MgSO4, 2 Mm CaCl2, 1.25 mM KH2PO4, 26 mM NaHCO3, 10 mM glucose) into the optic tectum of individual 6-dpf zebrafish larvae for 20 min (MultiClamp 700B amplifier, Digidata 1550 digitiser, Axon instruments, USA). The larvae were restrained with the aid of a thin layer of 2% low melting point agarose. The Clampfit version 10.6.2 software (Molecular Devices Corporation, USA) was used for processing the EEG recordings. The data were analysed manually by a trained observer, blind to the genotype of the larvae.
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10

Measuring Cortical Glutamate Release Using EFS

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For stimulation of cortical axons, we applied electrical field stimulation (EFS) using a bipolar matrix electrode (FHC) that was placed at the dorsolateral corpus callosum to evoke glutamate release (Jiang et al., 2016 (link)). The astrocytes or neurons to be assessed were typically located 200 µm away from the stimulation site. For Lck-GCaMP6f or iGluSnFR imaging of Ca2+ and glutamate, individual pulses were 0.2 ms in duration and stimuli were delivered at 4 mA and at 10 Hz. iGluSnFR imaging was performed at 0.5–1 Hz based on past work, which shows EFS-evoked glutamate signals can be measured and are prolonged when glutamate uptake was blocked. iGluSnFR itself has intrinsically fast kinetics in solution that we and others have modeled (Haustein et al., 2014 (link); Marvin et al., 2013 (link)), but this should not be confused with the kinetics of the underlying EFS-evoked glutamate signals in brain slices which are slower and detected with our methods (Chai et al., 2017 (link); Haustein et al., 2014 (link); Jiang et al., 2016 (link)). Electrically evoked EPSCs were analyzed using Clampfit version 10.2 (Molecular Devices).
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