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13 protocols using anti tbet 4b10

1

Flow cytometry analysis of splenic immune cells

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Single cell suspensions of spleens were prepared by mechanical disruption. Surface staining for flow cytometry was performed using standard techniques (Johnston et al., 2009 (link)) and the following clones: CD4 (RM4-5), CD45.1 (A20), CD44 (IM7) and CD62L (MEL-14) (eBiosciences); CD8 (53-6.7) and B220 (RA3-6B2) (BD Biosciences); as well as CD8 (53-6.7), CD127 (A7R34), KLRG-1 (2F1), CD90.1 (OX-7), SLAM (TC15-12F12.2) (BioLegend). CXCR5 staining was performed as described (Choi et al., 2013 ). Intracellular staining after surface stains was performed using the “Foxp3 staining buffer” set (eBiosciences), using anti-Bcl6 monoclonal antibody (K112-91, BD Biosciences), anti-Tbet (4B10) or anti-Granzyme B (GB11) (Biolegend).
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2

Murine Immune Cell Phenotyping

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Antibodies and reagents used for experiments include anti-CD11c (N418), anti-CD11b (M1/70), anti-CD8a (53–6.7), anti-B220 (RA3–6B2), anti-CD49B (DX5), anti-CD25 (PL61), Streptavidin (405232), anti-CD4 (GK1.5), anti-CD45.2 (104), anti-CD62L (Mel-14), Ly-6C (AL-21), anti-IFN-γ (XMG1.2), anti-CD3 (145–2C11), Rat IgG1 Isotype control (RTK2071), anti-CD28 (37.51), anti-CD5 (53–7.3), anti-VISTA (MIH63), anti-T-bet (4B10), (BioLegend), anti-CD69 (H1.2F3), anti-RORgt (q31–378), anti-TCR V beta 11 (RR3–15), anti-Nur77 (12.14), (BD), anti-TCR V alpha 3.2 (RR3–16), anti-Foxp3 (FJK-16 s), Fc-block (anti-CD16/32) (2.4G2), (ATCC).
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3

Comprehensive Immune Cell Profiling

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The following fluorophore-conjugated antibodies were used for flow cytometry: anti-CD8 (53–6.7), anti-Thy1.1 (OX-7), anti-Vα2 (B20.1), anti-CD45 (30-F11), anti-PD-1 (29F.1A12), anti-CXCR3 (CXCR3–173), anti-IFNγ (XMG1.2), anti-IL-2 (JES6–5H4), anti-TNFα (MP6-XT22), anti-CD28 (37.51), anti-Tbet (4B10) (Biolegend); anti-CD27 (LG.7F9), anti-LAG3 (C9B7W), anti-granzyme B (Ngzb), anti-Eomes (Dan11mag) (Thermo Fisher); anti-pCD3ζ (pY142) (K25–407.69), anti-CXCR5 (2G8) (BD Biosciences).
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4

Intracellular Cytokine and Phospho-Protein Analysis

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Intracellular cytokine staining was performed as previously described [5 ]. Cell viability was determined with fixable viability dye eF660 or eF780 from eBioscience. The following antibodies were used: anti-IFN-γ (XMG1.2), anti-IL-17a (TC11-18H10.1), anti-CD4 (RM4–5), and anti-CD4 (GK1.5) (Biolegend). Cells from OT2 TCROVA recipients were stained with anti-CD45.2 (104)(Biolegend) and anti-CD45.1 (A20) (BD).
For phospho flow cytometry, cells were fixed for 7 min in 0.4% paraformaldehyde at room temperature and stained with fixable viability dye. After at an additional 7 mins in 4% paraformaldehyde the cells were permeablized in 90% methanol for 20 mins at 4°C. Cells were then stained with antibodies to pY701-STAT1 (58D6), pY705-STAT3 (D3A7), pS9-GSK3β (D85E12), pS473-AKT (D9E), pS235/236-S6 (D57.2.2E), Ku80 and/or β catenin (L54E2)(from Cell Signaling) and anti-CD4. Other reagents used as needed were goat anti-rabbit 488 (Jackson Immunoresearch), anti-RORγ(AFKJS-9, eBioscience), anti-RORγ (B2D) (eBioscience), anti-Tbet (4B10)(Biolegend). Tyramide amplification of pS473-AKT was performed using the kit (Molecular Probes). All samples were analyzed using a BD Facs Calibur or BD LSR2 and analyzed with FlowJo software.
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5

Regulatory T Cell Staining Protocol

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Cells were stained for Foxp3 flow cytometry analysis according to the staining procedure described in the Mouse Regulatory T Cell Staining Kit # 3 (eBioscience, San Diego, CA, USA). We did not stimulate the cells prior to cytokine staining since it could have caused artefacts upon Foxp3 staining37 (link).
Antibodies from eBioscience were as follows: anti-CD4 (RM4-5), anti-CD25 (PC61.5), anti-CD38 (90), anti-CD39 (24DMS1), anti-CD44 (IM7), anti-Eos (ESB7C2) and anti-Foxp3 (FJK-16s). The following antibodies were from Biolegend, San Diego, USA: anti-Bcl2 (BCL/10C4), anti-Helios (22F6), anti-IFN-γ (XMG1.2), anti-IL-2 (JES6-5H4), anti-IL-17 (TC11-18H10.1) and anti-T-bet (4B10). The anti-CD8 (53-6.7) was from BD and anti-Nrp1 (761705), anti-Ebi3 (355022) and anti-IL-12p35 (27537) were from R&D, Minneapolis, MN, USA.
The stained cells were analyzed on a FACSCalibur or BD LSRII Flow Cytometry (BD) at the core facility (BioVis) Uppsala University, Uppsala, Sweden. The data were analyzed with Diva 6.0 software (BD) or Flowlogic software (Inivai Technologies, Australia). Gating strategies were made using single stained and fluorescence minus one-stained controls. Manufacturer’s instructions (BD) were followed strictly while analyzing the data and performing the flow cytometry staining.
Note: When we refer to CD4+ in thymic glands in this paper, it means CD4+CD8 and CD8+ means CD8+CD4.
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6

Murine Immune Cell Phenotyping

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Antibodies and reagents used for experiments include anti-CD11c (N418), anti-CD11b (M1/70), anti-CD8a (53–6.7), anti-B220 (RA3–6B2), anti-CD49B (DX5), anti-CD25 (PL61), Streptavidin (405232), anti-CD4 (GK1.5), anti-CD45.2 (104), anti-CD62L (Mel-14), Ly-6C (AL-21), anti-IFN-γ (XMG1.2), anti-CD3 (145–2C11), Rat IgG1 Isotype control (RTK2071), anti-CD28 (37.51), anti-CD5 (53–7.3), anti-VISTA (MIH63), anti-T-bet (4B10), (BioLegend), anti-CD69 (H1.2F3), anti-RORgt (q31–378), anti-TCR V beta 11 (RR3–15), anti-Nur77 (12.14), (BD), anti-TCR V alpha 3.2 (RR3–16), anti-Foxp3 (FJK-16 s), Fc-block (anti-CD16/32) (2.4G2), (ATCC).
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7

Multicolor Flow Cytometry of Immune Cells

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Fluorophore- or biotin-conjugated antibodies specific for mouse cell-surface antigens and cytokines were as follows: anti-B220 (RA3-6B2, BioLegend), anti-CD4 (GK1.5, BioLegend), anti-CD8a (53-6.7, BioLegend), anti-CD11b (M1/70, BioLegend), anti-Gr1 (RB6-8C5, BioLegend), anti-CD25 (3C7, BioLegend), anti-Foxp3 (MF14, eBioscience), anti-TER119 (TER-119, BioLegend), anti-CD71 (R17 217.1.3, BioXCell for depletion; C2F2, BD biosciences for FACS analysis), anti-CD45 (I3/2.3, BioLegend), anti-CD90.1 (16-10A1, BioLegend), anti-Gzmb (GL1, BioLegend), anti-IFN-γ (XMG1.2, BioLegend). anti-CXCR5 (L138D7, BioLegend), anti-mouse/human CD44 (IM7, BioLegend), anti-human/mouse Bcl-6 (7D1, BioLegend), anti-T-bet (4B10, BioLegend), anti-mouse Ki-67 (16A8, BioLegend), anti-mouse TNF-α (MP6-XT22, BD). For human studies, the following fluorophore- or biotin-conjugated antibodies specific for cell surface markers or cytokines were used: anti-CD3 (UCHT, BioLegend), anti-CD8 (PRA-T8, BioLegend), anti-CD45 (2D1, BioLegend), anti-CD71 (CY1G4, BioLegend), anti-CD235a (HI264, BioLegend). ROS production was measured by labelling with 2′,7′ –dichlorofluorescin diacetate using the ROS detection kit (S0033, Beyotime).
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8

Phenotypic Analysis of Thymic T Cells

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Single-cell suspensions were prepared from the thymus by manual disruption using syringe plunger. PBS57-CD1d1 tetramer was obtained from the National Institutes of Health Tetramer Core Facility. The complete list of surface antibodies used is as follows: Anti-CD5 (53-7.3), anti-CD6 (BX222), anti-Ly6c (AL-21), anti-Vβ2 (B20.6), anti-Vβ7 (TR310), anti-Vβ8.1-8.2 (MR5-2), anti-Vβ8.3 (1B3.3), anti-Egr2 (erongr2), anti-CD24 (M1/69), anti-CD69 (H1.2F3). From BD Biosciences: anti-TCRβ (H57-597), anti-CD8α (53-6.7); from BioLegend: anti-CD44 (IM7); anti-CD4 (RM4-5). Surface antibody staining was done then cells were fixed and permeabilized using the FoxP3 buffer set (eBioscience). Fixed and permeabilized cells were incubated with intracellular antibodies including anti-PLZF (Mags.21F7; eBioscience), anti-Tbet (4B10; BioLegend), and anti-Rorγt (Q31-378; BD Biosciences). Cells were analyzed on a BD LSRFortessa (BD Biosciences) and data were processed with FlowJo software (TreeStar).
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9

Multiparameter Flow Cytometry Analysis

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For flow cytometry, cells were stained with following antibodies: anti-CD3ε (145-2C11), anti-CD8 (53-6.7), anti-CD4 (GK1.5), anti-CD24 (M1/69), anti-CD45.1 (A20), anti-CD45.2 (104), anti-B220 (RA3-6B2), anti-NKG2D (CX5), anti-IL-2Rβ (TM-β1), anti-CD94 (18d3), anti-IFN-γ (XMG1.2), anti-IL-4 (11B11), and anti-T-bet (4B10) were purchased from BioLegend. Anti-NK1.1 (PK136), anti-TCRβ (H57-597), anti-CD44 (IM7), anti-IgG1 (A85-1), anti-CD1d (1B1), and anti-CD90.2 (53-2.1) were obtained from BD Biosciences. Anti-IL-17 (ebio17B7) and anti-Rorγt (AFKJS-9) were purchased from eBioscience. Anti-PLZF (D-9) was obtained from Santa Cruz Biotechnology. Anti-CXCR3 (220803) was purchased from R&D Systems. Anti-S100a6 (EPNCIR121) was obtained from Abcam. Anti-CD16/CD32 (2.4G2) was acquired from Bio-Xcell (Malaysia).
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10

Multiparameter Flow Cytometry Analysis

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For flow cytometry, cells were stained with following antibodies: anti-CD3ε (145-2C11), anti-CD8 (53-6.7), anti-CD4 (GK1.5), anti-CD24 (M1/69), anti-CD45.1 (A20), anti-CD45.2 (104), anti-B220 (RA3-6B2), anti-NKG2D (CX5), anti-IL-2Rβ (TM-β1), anti-CD94 (18d3), anti-IFN-γ (XMG1.2), anti-IL-4 (11B11), and anti-T-bet (4B10) were purchased from BioLegend. Anti-NK1.1 (PK136), anti-TCRβ (H57-597), anti-CD44 (IM7), anti-IgG1 (A85-1), anti-CD1d (1B1), and anti-CD90.2 (53-2.1) were obtained from BD Biosciences. Anti-IL-17 (ebio17B7) and anti-Rorγt (AFKJS-9) were purchased from eBioscience. Anti-PLZF (D-9) was obtained from Santa Cruz Biotechnology. Anti-CXCR3 (220803) was purchased from R&D Systems. Anti-S100a6 (EPNCIR121) was obtained from Abcam. Anti-CD16/CD32 (2.4G2) was acquired from Bio-Xcell (Malaysia).
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