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13 protocols using z 4 hydroxytamoxifen 4 oht

1

Viral Replication Kinetics in ARPE-19 Cells

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For the experiment shown in Fig. 5, ARPE-19 cells were seeded at 1 × 105 cells per well in 24-well cluster plates. Where indicated, cells were treated with doxycycline (100 ng/mL) for 24 h and then with (Z)-4-hydroxytamoxifen (4-OHT; Sigma-Aldrich catalog no. 508225) at a final concentration of 1 μM for 1 h to induce myr-Akt or nuclear localization of FoxO3a-TM-ER, respectively. Each drug was applied from a 1,000× stock solution (in water for doxycycline and in ethanol for 4-OHT); therefore, carrier-alone control wells were treated with the same volume of absolute ethanol and/or water (0.1%, final concentration). Next, TB40/E or AD169 rUL131 virus was applied at an MOI of 2 (2 TCID50 per cell), as indicated. For viral replication kinetics studies, infected cell supernatants were collected at the indicated time points and stored at −80°C until determination of titer by the TCID50 assay using the Reed and Muench method, as described elsewhere (53 (link)).
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2

Tamoxifen Preparation and Administration

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The tamoxifen solution for injections (1 mg/mL) was freshly prepared by sonicating tamoxifen (T5648, Sigma-Aldrich) in sunflower seed oil (S5007, Sigma-Aldrich) at room temperature for 20–30 min (with intermittent 20 s vortexing every 10 min). This solution was stored at 4°C for 5–7 days away from light. In Aldh1l1-CreER;ROSA26-lsl-GCaMP6s, Aldh1l1-CreER;mGluR5fl/fl and Aldh1l1-CreER;mGluR3fl/fl mice and their controls, (Z)-4-Hydroxytamoxifen (4-OHT; H7904; Sigma-Aldrich) was used. To prepare 4-OHT, powder was dissolved in 100% EtOH to achieve a final concentration of 20 mg/ml. Stock aliquots containing 50 μl were made and stored at −80° until needed. When needed, 250 μl of sunflower seed oil was added to the aliquot, and sonicated for 20–30 min (with intermittent 20 s vortexing every 10 min). The solution was then spun using a speed vacuum to ensure evaporation of the EtOH and used within 24hrs. Mice were injected intraperitoneally (i.p.) with 50 μl of tamoxifen (50 ng per animal) or 4-OHT (200 μg per animal) between P1-P3 (unless otherwise mentioned in the text), once a day for two consecutive days, with each injection a minimum of 20 hrs apart.
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3

Immunoblotting Analysis of Cell Signaling

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Mouse monoclonal anti‐α‐tubulin antibody was purchased from Sigma‐Aldrich (St. Louis, MO, USA). Rat monoclonal anti‐Snail antibody, mouse monoclonal RB, and rabbit polyclonal anti‐phospho‐RB and phospho‐AKT antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Rabbit anti‐p16INK4A antibody and rat anti‐HA (3F10) antibody were from Abcam (Cambridge, UK) and Roche (Indianapolis, IN, USA), respectively. Rabbit anti‐p21 antibody was from SantaCruz Biotechnology (Dallas, TX, USA). Transient transfection with siRNAs was performed using Lipofectamine RNAiMAX (Invitrogen). (Z)‐4‐Hydroxytamoxifen (4OHT) was obtained from Sigma‐Aldrich.
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4

Generation and Purification of Flt3L-DCs

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BMDCs were cultured as previously described with minor modification [59 (link)]. Bone marrow cells collected from femurs and tibias were cultured in RPMI-1640 medium (HyClone) supplemented with 10% FBS (Gibco), 50 μM 2-mercaptoethanol (Sigma–Aldrich), penicillin and streptomycin (Invitrogen) in the presence of 10 ng/ml mouse granulocyte-macrophage colony-stimulating factor (mGM-CSF; R&D) and 10 ng/ml mIL-4 (R&D). The culture medium was replenished on Day 3, and the cells were harvested on Day 7. Bone marrow cells were cultured in the presence of 150 ng/ml mFlt3L (R&D) and harvested on Days 8−9 to collect Flt3L-DCs. For p38α deletion in Flt3L-DCs derived from p38αCreER mice, 0.5 μM (Z)-4-hydroxytamoxifen (4-OHT; Sigma–Aldrich) was added on Day 4. The purity of both CD11c+ BMDC populations was >80%. Flt3L-cDC1s (CD11c+ B220CD24+CD11b) were sorted by FACS for coculture.
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5

Mammary Epithelial Cell Culture Protocol

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All cell lines used in the study, including mammary epithelial cell lines (human HMLE, MCF10A and mouse NMuMG cell lines), breast cancer cell lines (human MDA-MB-231, HMLE-Neu, T47D, MCF7, BT474, and mouse 4TO7 cell lines) and other cell lines (HEK293T, H29 and HeLa), were cultured using the standard conditions according the American Type Culture Collection (ATCC) instructions. HMLE and HMLE-Neu cells were obtained from Dr. Robert Weinberg at MIT. iMMEC cells were obtained from Dr. Vassiliki Karantza at CINJ. Primary isolated mammary epithelial cells (MECs) were cultured with MEGM (Lonza) and immortalized murine MECs (iMMECs) were cultured as described66 (link). No cell lines used in this study were found in the database of commonly misidentified cell lines that is maintained by ICLAC and NCBI Biosample. The cell lines were not authenticated. Mycoplasma contamination was routinely checked (monthly) in the lab by PCR analysis; all cell lines used in the study were confirmed to be mycoplasma negative. TGF-β1 (R&D systems) and Z-4-hydroxytamoxifen (4-OHT) (Sigma-Aldrich) cell culture treatments in vitro were done for 12 days, at 100 pM and 20 nM, respectively.
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6

Tamoxifen-Resistant Breast Cancer Cell Culture

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MCF-7 cells were purchased from ATCC (#HTB-22). The tamoxifen-resistant variant of MCF-7 cells (MCF-7/TamR) was generously provided by Dr. Guandi Wang (Xavier University). The T47D cells were kindly provided by Dr. Ameae Walker (University of California, Riverside). The cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetalbovine serum (FBS; Invitrogen-Gibco) and penicillin– streptomycin (100 IU/mL) at 37 °C in an atmosphere with 5% CO2. The MCF-7/TamR cells were continuously cultured in the above-described medium containing 0.10 μM (Z)-4-hydroxytamoxifen (4-OHT, Sigma-Aldrich) for at least 6 months to allow them to develop resistance to the drug with an IC50 of ∼5 μM 4-OHT.13 (link)For other experiments, 4-OHT was dissolved in ethanol at a concentration of 10 mM and stored at −20 °C. For SILAC experiments, [13C6,15N2]-l-lysine and [13C6]-l-arginine (Cambridge Isotopes Inc.) or their unlabeled counterparts were added to SILAC DMEM medium depleted of l-lysine and l-arginine (Thermo Scientific Pierce) until their final concentrations reached 0.398 and 0.798 mM, respectively, to yield “heavy” and “light” media. Cells were cultured in the “heavy” SILAC DMEM medium for at least 6 cell doublings to ensure complete incorporation of heavy-isotope-labeled amino acids.
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7

Tamoxifen-Sensitive and Resistant MCF-7 Cells

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Tamoxifen-sensitive (TamS; B7TamS and C11TamS) and resistant (TamR; G11TamR and H9TamR) MCF-7 cells[9 (link)] were a gift from Dr. Joshua LaBaer. TamS cells were grown in Dulbecco's Modified Eagle Medium (DMEM) supplemented with 5% fetal bovine serum (FBS) and 1% Penicillin Streptomycin, and TamR cells were grown in the same media supplemented with 1 μM tamoxifen. Tamoxifen used throughout in this paper is (Z)-4-Hydroxytamoxifen (4-OHT; Sigma-Aldrich; Cat# H7904).
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8

LC/MS-Grade Solvents and Compounds for Biochemical Assays

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Ammonia solution 0.88 SG, formic acid, OptimaTM LC/MS grade water, and OptimaTM LC/MS grade acetonitrile were purchased from Fisher Scientific (Loughborough, United Kingdom). Ammonium acetate was from Sigma-Aldrich (Gillingham, United Kingdom), and ammonium formate from Thermo Fisher Acros Organics (Geel, Belgium). (Z)-4-Hydroxytamoxifen (4-OHT) and MS222 (ethyl 3-aminobenzoate methanesulfonate salt, also called tricaine) were purchased from Sigma Aldrich (Gillingham, United Kingdom).
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9

Optimizing Eset1 Knockout in MEFs

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Eset1-conditional MEFs were described previously6 (link). To optimize deletion efficiency, we sorted single cells in 96-well plates and selected for cell clones with high Cre activity (clone Eset25, referred to as E1c). After CRISPR/Cas9-mediated gene disruption (see below), we further re-introduced a construct expressing tamoxifen-inducible Cre together with a puromycin resistance gene (pCAGGS-CreERT2-EGFP-IRES-PURO), and maintained the cell lines under constant puromycin selection. Cre-mediated deletion of exons 15 and 16 of Eset1 was induced by growing the cells in a medium containing 1 μM (Z)-4-hydroxytamoxifen (4-OHT, Sigma Aldrich, H7904) for 2 days, followed by 2 days in normal medium, to minimize potential side effects of prolonged growth in presence of tamoxifen. Deletion efficiency was assessed by RT-qPCR with primers specific for the deleted exons, or by western blot for the Eset1 protein. We refer to E1c as WT.
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10

Mammary Epithelial Cell Culture Protocol

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All cell lines used in the study, including mammary epithelial cell lines (human HMLE, MCF10A and mouse NMuMG cell lines), breast cancer cell lines (human MDA-MB-231, HMLE-Neu, T47D, MCF7, BT474, and mouse 4TO7 cell lines) and other cell lines (HEK293T, H29 and HeLa), were cultured using the standard conditions according the American Type Culture Collection (ATCC) instructions. HMLE and HMLE-Neu cells were obtained from Dr. Robert Weinberg at MIT. iMMEC cells were obtained from Dr. Vassiliki Karantza at CINJ. Primary isolated mammary epithelial cells (MECs) were cultured with MEGM (Lonza) and immortalized murine MECs (iMMECs) were cultured as described66 (link). No cell lines used in this study were found in the database of commonly misidentified cell lines that is maintained by ICLAC and NCBI Biosample. The cell lines were not authenticated. Mycoplasma contamination was routinely checked (monthly) in the lab by PCR analysis; all cell lines used in the study were confirmed to be mycoplasma negative. TGF-β1 (R&D systems) and Z-4-hydroxytamoxifen (4-OHT) (Sigma-Aldrich) cell culture treatments in vitro were done for 12 days, at 100 pM and 20 nM, respectively.
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