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3 protocols using 1 butanol

1

Quantification of Prostaglandin Biomarkers

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Citric acid, phosphoric acid, L(+)-ascorbic acid, 1-butanol, and ethyl acetate were from Roth (Karlsruhe, Germany). Oxidized LDL ELISA kits (Cod: 10-1143-01) were from Mercodia (Uppsala, Sweden). The 9α,11α,15S-trihydroxy-prosta-5Z,13E-dien-1-oic-3,3,4,4-d4acid (PGF2α-d4, CAS 34210-11-2), 9β,11β,15R-trihydroxy-(8β,12α)-prosta-5Z,13E-dien-1-oic acid (ent-PGF2α, CAS 54483-31-7), 9α,11α,15S-trihydroxy-(8β)-prosta-5Z,13E-dien-1-oic acid (8-iso PGF2α, CAS 27415-26-5), and (3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxy-1-octen-1-yl]cyclopentyl]-3-pentenoic acid (2,3-dinor-8-isoPGF2α, CAS 221664-05-7) were purchased from Cayman Chemical (Ann Arbor, MI, USA). Formic acid was from Merck (Darmstadt, Germany). LC-MS-grade water and methanol were purchased from VWR Chemicals (Darmstadt, Germany).
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2

Enzymatic Nucleic Acid Manipulation Protocol

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Calf
intestine alkaline phosphatase, micrococcal
nuclease (from Staphylococcus aureus), bovine spleen
phosphodiesterase, and ribonuclease A from bovine pancreas (RNase)
were purchased from Sigma-Aldrich (Steinheim, Germany). Proteinase
K, HPLC-grade methanol, 2-propanol, 1-butanol, formic acid, and acetic
acid were from Carl Roth GmbH (Karlsruhe, Germany). Herring sperm
DNA and all other reagents and solvents (analytical grade) were from
Sigma-Aldrich.
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3

Cultivation of S. acidocaldarius with Butanol

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S. acidocaldarius strain DSM 639 was cultivated aerobically at 76°C in basal Brock medium, pH 3.0 (8 (link)), supplemented with 0.1% (wt/vol) NZ-amine (EZMix N-Z-Amine; Merck, Sigma-Aldrich, Darmstadt, Germany), 0.2% (wt/vol) d-glucose and different concentrations of 1-butanol (0% to 2.5% [vol/vol]; ≥99.5% p.a., Roth, Karlsruhe, Germany) or other organic solvents (ethanol, 99.9% GC, Fisher Scientific, Thermo Fisher Scientific, Waltham, MA, USA; 1-propanol, ≥99.5% GC, Merck; isobutanol, ≥99% GC, Honeywell Riedel de Haën, Fisher Scientific). Liquid cultures were incubated with agitation (180 rpm). Precultures of S. acidocaldarius (OD600 of 1.18, logarithmic phase) were used to inoculate fresh medium without or with 1-butanol (0% to 1.5% [vol/vol]) to a starting OD600 of 0.05. Cell growth (OD600 values) and concentrations of d-glucose and 1-butanol were determined regularly throughout 3 weeks of cultivation. Experiments were performed in four biological replicates.
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