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Psychophysics toolbox version 3

Manufactured by MathWorks
Sourced in United States

Psychophysics Toolbox Version 3 is a software package for the presentation and analysis of psychophysical experiments. It provides a set of functions and tools for creating and running visual, auditory, and other types of experimental paradigms. The toolbox is designed to work with MATLAB and provides a flexible and powerful platform for conducting psychophysical research.

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8 protocols using psychophysics toolbox version 3

1

Tactile Stimulation in fMRI Experiments

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Instructions and other visual elements were back-projected onto a screen at the foot end of the scanner using a Canon XEED LCD projector (1,280 × 1,024 pixels, 60 Hz). The tactile stimuli were delivered to participants’ left index fingertip using a mini-PTS MR-compatible tactile transducer system (Dancer Design). This system had a tactor that was ∼6 mm in diameter. The output of the system’s amplifier was set to a comfortable level based on pilot study feedback (Level 6 on the system). The tactor was attached to a wooden block, making it easier for participants to keep their finger in contact with the tactor by grasping hold of the block. They wore ear plugs to protect against scanner noise. Head motion was restricted by placing foam pads between the head and head coil. The experiment was run on a Windows 7 PC using the Psychophysics Toolbox version 3 (run on 32-bit MATLAB 2012, Mathworks, Inc.; Brainard, 1997 (link); Pelli, 1997 (link); Kleiner et al., 2007 ) to control the experiment, present the stimuli and record behavioral responses.
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2

Neuroimaging Study of Child-Friendly Auditory Processing

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All words were child-friendly, high-frequency monosyllabic words matched within and across conditions (morphology and control) for concreteness, written and verbal frequency, number of sounds, syllables and letters (data from MRC Psycholinguistic database). Ad hoc t-tests comparing the conditions within and across were non-significant (p > 0.05). All words were recorded by a female-speaker who was native to the Midwest region in the United States (same locale as the participants). The words were then filtered and normalized to 80-dB using Adobe Audition 1.5 software. The task was presented using Psychophysics Toolbox Version 3 (PTB-3) in MATLAB (2010a, MathWorks). While in the fMRI, sounds were played using Pyle Home PCA1 30-Watt Stereo Mini Power amplifier to moderate the volume, and children wore Sensimetrics insert earphones model S14 and MRI non-magnetic earmuffs Ultra-33 (NRR 33) to attenuate scanner noise and allow better quality of audio.
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3

Dichoptic Stimulus Presentation for Visual Perception

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The experiment was programmed with the Psychophysics Toolbox Version 3 [56 (link), 57 (link)] in Matlab (MathWorks). Stimuli were presented on an BenQ XL2720Z LCD monitor with a resolution of 1920 × 1080 pixels (display dot pitch 0.311 mm) at 120 Hz. The monitor was run from an NVidia Quadro K 420 graphics processing unit. Observers were seated in a dimly lit room, 45 cm in front of the monitor with their heads stabilized in a chin and forehead rest and wore active stereoscopic shutter-glasses (NVIDIA 3DVision) to control dichoptic stimulus presentation. The cross talk of the dichoptic system was 1% measured with a Spectrascan 6500 photometer.
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4

Visual Stimuli Presentation for MEG Experiments

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Stimuli were generated using MATLAB 8.5 (The MathWorks) and Psychophysics Toolbox, version 3 (Brainard, 1997 (link); Pelli, 1997 (link)). A DLP projector (PROPixx; VPixx Technologies) showed the stimuli at a refresh rate of 120 Hz centered onto a translucent screen (25 horizontal × 16 vertical degrees of visual angle [DVA]). The screen was located in front of the participant (viewing distance, 125 cm) within the dimly lit, magnetically shielded MEG room. Stimulus timing was controlled with a data and video processing peripheral (DATAPixx; VPixx Technologies) and monitored via a photograph diode placed at the upper left corner of the projection screen. The delay between trigger and stimulation onset was corrected with this method.
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5

Functional Study of Finger Movement Patterns

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The functional study was conducted in a single session. The participants performed the same task three times, once for each digit (thumb (D1), index (D2), and little (D5)) of the right hand. The task consisted of flexing one finger from an extended position periodically following a visual cue. The visual cue was projected on a screen at the end of the scanner’s bore, which the participants viewed using a mirror. The visual cue was generated in ‘Matlab’ (The MathWorks, Natick, United States) using the ‘Psychophysics Toolbox Version 3’ (Brainard 1997 (link); Kleiner et al. 2007 ). The task paradigm consisted of 30 s of baseline with one-minute blocks: 30 s paced flexing-extension at 1 Hz and 30 s rest, repeated ten times, resulting in 10 min and 30 s of acquisition for each digit (defined as one run). For this task, flexion of D5 usually resulted in co-movement of D4 and the distal phalanx of D3. Nevertheless, we refer to this movement as ‘D5’. All participants underwent approximately 32 min of functional data recording, encompassing three 10-min runs, one for each digit. A functional localizer was used prior to the three-digit acquisition runs to ensure the left primary sensorimotor areas coverage. The stimulus paradigm consisted of fingertapping with 30 s of baseline, then alternating between 12 s of movement, and 24 s of rest, using a 3D EPI gradient echo sequence.
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6

Orientation Perception Task with Eye Tracking

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Stimuli were presented on a 19-inch CRT monitor (1024 x 768 pixels) at 100 Hz. Participants were seated with their head resting on a chin and forehead rest in order to reduce head movements. The eyes were horizontally and vertically aligned with the center of the screen at a distance of 62 cm. Eye movements were recorded with the EyeLink 1000 system (detection algorithm: pupil and corneal reflex; 1000 Hz sampling; saccade detection was based on a 30 deg/s velocity and 9500 deg/s2 acceleration thresholds). Participant responses in the orientation perception task were recorded on a standard keyboard. A five point-calibration on the horizontal and vertical axes was run at the beginning of each experimental block. The programs for stimulus presentation and data collection were written in MATLAB (MathWorks) using the Psychophysics Toolbox Version 3 [47 (link)], [48 (link)], and Eyelink Toolbox extensions [49 (link)].
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7

Sustained Attention Evaluation using PVT

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The psychomotor vigilance task (PVT) is a simple but mentally demanding reaction time test, which is often used in research on sustained attention and fatigue [17 (link)]. In the present study, a 30 min version of PVT was administered (Figure 1). During the test, subjects were required to monitor three adjacent boxes representing a millisecond counter. Once the counter occurred in the center of a computer monitor, they needed to respond by pressing the space bar as quickly as possible. Subjects were given a maximum of 1 s to stop the counter and received their reaction time (RT) after the counter was presented. The interval of counters was 2-10 s (mean = 6 s), and the task included 300 trials in total. The stimulus presentation was programmed with the Psychophysics Toolbox Version 3 (http://psychtoolbox.org) for MATLAB (The MathWorks, Inc., Natick, MA, US).
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8

Binocular Viewing with 3D Shutter Glasses

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Stimuli were presented on a 27-in. BenQ XL2720Z LCD monitor (BenQ Corporation, Taipei, Taiwan) set to a screen resolution of 1,920 × 1,080 pixels at 120 Hz and run using a Dell Optiplex 9020 desktop computer (Dell Inc. Round Rock, TX) with a Quadro K420 graphics card. The experiment was programmed and run using MATLAB (The MathWorks, Inc., Natick, MA) and the Psychophysics Toolbox Version 3 (Brainard, 1997 (link); Pelli, 1997 (link)). Participants viewed the screen binocularly while wearing wired NVidia 3D Vision shutter glasses. Observers were seated at a distance of 53 cm from the monitor with head stabilization secured via chinrest. Eye movements were recorded using an SR Research Eyelink 1000 (SR Research Ltd. Mississauga, Ontario, Canada) and the MATLAB Eyelink Toolbox (Cornelissen et al., 2002 (link)). The sampling rate was set to 1,000 Hz. A 9-point calibration task was completed while wearing the shutter glasses before the start of each block.
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