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Mitored

Manufactured by Dojindo Laboratories
Sourced in Japan

MitoRed is a fluorescent dye used to detect mitochondria in living cells. It is a lipophilic cation that selectively accumulates in the mitochondria based on the negative membrane potential. MitoRed emits red fluorescence upon binding to mitochondria, allowing for visualization and analysis of mitochondrial structure and function.

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11 protocols using mitored

1

Measuring MMP in T. gondii-infected HFF cells

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The measurement of MMP was as described elsewhere (Adeyemi et al. 2017 (link)). Briefly, growing HFF cells were treated with C. gigantea oil in the absence/presence of T. gondii infection. After 24 h incubation at 37 °C and 5% CO2 atmosphere, the cells were harvested, purified, and stained with 200 nM MitoRed (Dojindo Molecular Technologies Inc. Japan) by following the manufacturer’s protocol. Fluorescence measurement was acquired by using a spectrofluorometer (Corona Electric, Japan) with excitation set at 560 nm and emission at 580 nm.
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2

Cell Uptake and Localization of FAM-Conjugated FF/CAP18

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Synthetic FF/CAP18 was conjugated with 5-carboxyfluorescein (FAM; Scrum Co. Ltd., Tokyo, Japan). HCT116 cells were examined at 1 and 6 h after treatment with FAM-FF/CAP18 (40 µg/ml). The nuclei were visualized by staining with 1 µg/ml 4′,6-diamidino-2-phenyl-indole (Dojindo Laboratories, Kumamoto, Japan) 6 h after treatment with FAM-FF/CAP18. The mitochondria were also visualized by staining with 200 nM MitoRed (Dojindo Laboratories). The staining was visualized using a BZ-8100 fluorescence microscope (Keyence, Tokyo, Japan). Each experiment was conducted in triplicate.
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3

Plasma-Induced Potential Stimulation Assay

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Fluorescence microscopy was used to elucidate the biological effect of plasma-induced potential stimulation using fluorescent regents MitoRed (Dojindo, 344-08851) and SYTOX-Green (Thermo, S7020). MitoRed stains living cells and SYTOX-Green stains cells with pores on their membrane. Both fluorescent reagents were simultaneously used to count surviving cells with damage on the membrane. The fluorescence reagents were added at different times, 0 h and 24 h after potential stimulation, and before the stimulation. The fluorescence images of the HeLa cells were taken by an inverted fluorescence microscope (Carl Zeiss, Axio Observer D1) using a 96-well glass bottom plate (Iwaki, 5866-096).
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4

Mitochondrial Assays with Qing Dai

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Indomethacin (IND) and acetylsalicylic acid (ASA) were obtained from Wako Pure Chem. Ind., Ltd. (Osaka, Japan). Aminophenyl fluorescein (APF; Sekisui Medical Co., Ltd., Tokyo, Japan), 2-[5,5-dimethyl-2-oxo-2λ5-(1,3,2)dioxaphosphinan-2-yl]-2-methyl-3,4-dihydro-2H-pyrrole 1-oxide (Radical Research Inc., Tokyo, Japan), β-nicotinamide adenine dinucleotide (NADH; Sigma-Aldrich, St. Louis, MO), D-glutamic acid (Sigma-Aldrich), malic acid (Wako Pure Chem. Ind., Ltd.), succinic acid (Sigma-Aldrich), Cell Counting Kit-8 (Dojindo, Kumamoto, Japan), MitoRed (Dojindo), MitoSOX (Life Technologies Inc., Gaithersburg, MD), and MITOISO2 mitochondria isolation kit (Sigma-Aldrich) were purchased. Qing Dai powder was purchased from Seishinshoyakudo (Tokyo, Japan), a company that imports Qing Dai from China. The Qing Dai powder was dissolved in dimethyl sulfoxide (DMSO) at a proportion of 1:10 (w/v), sterilized by filtration (pore size, 0.2 µm), and stored at −20°C for subsequent bioassay testing. All experiments, we used 0.1% DMSO-contained medium with or without reagent such as Qing Dai. The concentration of IND or ASA was adjusted according to that reported in previous studies.(1 (link))
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5

Mitochondrial Membrane Potential Assay

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The measurement of mitochondrial membrane potential was acquired by spectrofluorimetry according to a procedure described by Baracca et al.26 (link) Briefly, growing HFF monolayers were infected with purified parasite suspension and incubated for 24 h at 37°C. The parasite-infested HFF monolayers were treated with the NPs and further incubated for 8 h at 37°C. The parasites were then harvested, purified, and stained with 200 nM MitoRed (Dojindo Molecular Technologies Inc, Kumamoto, Japan) by following the manufacturer’s protocol. Fluorescence acquisition was assessed using a spectrofluorometer with excitation set at 560 nm and emission at 580 nm.
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6

Mitochondrial Drp1 Localization Assay

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Cells were seeded on glass cover slips and incubated with or without 100 µM AZT for 48 h. Mitochondria were then stained with 100 nM MitoRed (Dojindo Laboratories, Kumamoto, Japan) at 37 °C for 30 min and fixed with 4% formalin in PBS for 15 min at room temperature. To block non-specific binding of antibodies, the specimens were treated with blocking-permeabilization buffer containing 1% bovine
serum albumin fraction V (Sigma-Aldrich, St. Louis, MO, USA), 5% normal goat serum (Vector Laboratories, Burlingame, CA. USA), and 0.3% Triton X-100 (Sigma-Aldrich) in PBS for 1 h, followed by rabbit anti-Drp1 antibody (Cell Signaling Technology; 1:50 dilution in blocking permeabilization buffer) at 4 °C for 18 h. Samples were washed three times with PBS and then incubated with CF488A-conjugated goat anti-rabbit immunoglobulin G antibody (Biotium, Fremont, CA, USA; 1:500 dilution in PBS). Cell nuclei were stained with DAPI. Samples were mounted with Prolong Diamond Antifade Mountant (Molecular Probes, Eugene, OR, USA). Images of mitochondria were acquired to determine Drp1 localization using a structured illumination microscope with 100× CFI-SR Apochromat TIRF objective lens (NA = 1.49) (Nikon, Tokyo, Japan). Drp1 localization in mitochondria was evaluated by calculating the Pearson correlation coefficient using NIS Elements software (Nikon).
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7

Mitochondrial Imaging and Parkin Localization

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Cells were incubated with 100 nmol/l MitoRed (MTR, λ Ex/Em = 560/580 nm, Dojindo, Japan) at 37 °C for 30 min. The cells were then fixed with precooled 4% paraformaldehyde at room temperature for 15 min, permeabilized with 1% Triton X-100 (in PBS) at 4 °C for 6 min, blocked with 5% BSA (in PBS) at room temperature for 30 min, incubated with the anti-Parkin antibody (1:50) at 4 °C overnight, incubated with Alexa Fluor 488Ex/Em = 488/545 nm)-conjugated secondary antibody (1:1000, 21206, Thermo Fisher, USA) at 37 °C for 30 min, and incubated with Hoechst 33342 (λEx/Em = 355/465 nm) at 37 °C for 10 min. The cells were then observed with a laser scanning confocal microscope (LSCM, Zeiss, Germany) (×600).
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8

Measuring Mitochondrial Membrane Potential

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The MMP measurement was as described previously (Adeyemi et al., 2017a ). In brief, cultures of HFF cells treated with C. sinensis oil in the absence/presence of T. gondii infection were incubated for 24 h at an atmosphere of 37 °C and 5% CO2. Thereafter, the cells were harvested, washed, and stained with 200 nM MitoRed (Dojindo Molecular Technologies Inc. Japan). Fluorescence was recorded on a spectrofluorometer with excitation set at 560 nm and emission at 580 nm.
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9

Oxidative Stress Measurement Assays

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Aminophenyl fluorescein (APF) (SEKISUI MEDICAL CO., LTD., Tokyo, Japan), CYPMPO (Radical Research Inc., Tokyo, Japan), β-nicotinamide adenine dinucleotide (NADH) (Life Technologies Co., Carlsbad, CA), D-glutamic acid (Life Technologies), malic acid (Wako Pure Chem. Ind., Ltd., Osaka, Japan), succinic acid (Life Technologies), diphenyl-1pyrenylphosphine (DPPP) (DOJINDO, Kumamoto, Japan), cell counting kit-8 (DOJINDO), MitoRed (DOJINDO) and ethanol (Wako Pure Chem. Ind.) were purchased. Alcohol-contained culture medium was prepared by mixing alcohol, and the culture medium was used after filter-sterilized (Millex 0.22 µm, Millipore Co., Billerica, MA).
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10

Simultaneous Live-Cell Imaging of Nuclei and Mitochondria

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Cells in a glass-bottomed dish were stained with 1 µg/mL Hoechst 33342 (H342, Dojindo Laboratories, Kumamoto, Japan) and 0.25 µM MitoRed (R237, Dojindo Laboratories). A glass-bottomed dish was placed on a stage-top incubator (Tokai Hit, Fujinomiya, Japan) that maintained a humidified atmosphere and 5% CO2 at 37 °C. Fluorescence microscopy was carried out by using an FV1200-IX83 laser scanning confocal microscope with an oil-immersed 60× objective (Olympus, Tokyo, Japan). Hoechst 33342 was excited with 405 nm laser, and fluorescence at 460 nm was monitored. MitoRed was excited with 559 nm laser, and fluorescence at 580 nm was observed. Images were captured and analyzed using FLUOVIEW software (Version 4.1, Olympus, Tokyo, Japan).
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