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1

Immunogenicity Assessment of Influenza Vaccines

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Immunogenicity of the vaccines was determined by enzyme-linked immunosorbent assay (ELISA) of sera samples collected on Day 35. HA1 and HA0 influenza B HA recombinant antigens were applied to 96-well plates and incubated overnight at 4°C (1.25 μg/mL). Plates were washed (405 TS ELISA Plate Washer, Agilent Technologies) with PBS plus 0.1% Tween 20 between all steps. After blocking (1% Omniblok, AmericanBio, Inc., and 0.1% Tween 20 in PBS), serum samples from vaccinated mice were plated at a 1:125 dilution followed by two-fold dilutions. Plates were then incubated at 37°C with a HRP conjugated secondary antibody (goat anti-mouse IgG (H+L), Thermo Fisher Scientific). Colorimetric detection occurred at room temperature and measured for absorbance at 405 nm (1-Step ABTS, Thermo Fisher Scientific). Endpoint titers levels were statistical defined per plate (31 (link)) and analysis of variance (ANOVA) tests were conducted with Tukey’s multiple comparisons test to determine group differences.
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2

ELISA Protocol for Antibody Binding Assay

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Antigen was applied to 96-well plates and incubated overnight at 4°C (1.25 μg/mL), following PBS washes and blocking (1% Omniblok, AmericanBio, Inc. and 0.1% Tween 20 in PBS), primary antibody was incubated for 2 hr at room temperature (serum samples were initially diluted 1:1000). Primary monoclonal antibodies were stocks at 1mg/ml and for ELISAs primary mAbs C179, FI6v3, and CR6261 was used at 0.5 μg/ml while discovered antibodies mAb-11, 49, 63, 67, 85 were tested at both 0.5 and 5 μg/ml as primary antibodies. Plates were washed and placed at 37°C for 1 hr with the addition of an HRP conjugated secondary antibody (goat anti-mouse IgG (H+L), Thermo Fisher Scientific). Colorimetric detection occurred for 15 min at room temperature and absorbance was read at 405 nm (1-Step ABTS, Thermo Fisher Scientific). Samples were run in quadruplicate. Endpoint titers levels were statistical defined per plate using saline sera to determine thresholds [95 (link)]. Statistical calculations were carried out with the software Prism (GraphPad). Statistical analysis was conducted for analysis of variance (ANOVA) using the F-test. The F statistic is reported [F() =] with the parenthesis being the degrees of freedom within groups separated by a comma followed by the significance level (p) at the end.
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3

Evaluating xtMC2R Mutant Expression

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CHO cells were transfected with 0.1 μg/mL wildtype or single alanine mutant xtMC2R and 0.1 μg/mL cMRAP1 using jetPRIME transfection reagent (Polyplus transfection SA, Illkirch, France). Cells were grown for 48 h at 37 °C and then incubated on ice. Cells were surface-labeled with anti-V5 antibody (1:1000, Rockland Immunochemicals, Limerick, PA, USA) and then fixed in 4% paraformaldehyde, pH 7.2 (Sigma, St. Louis, MO, USA). Fixed cells were washed in 1x phosphate-buffered saline and incubated at room temperature with HRP-conjugated goat-anti-rabbit secondary antibody (Sigma, St. Louis, MO, USA). Cells were then washed and treated with 1-step ABTS (Thermo-Fisher Scientific, Watham, MA, USA). Absorbance was measured at 405 nm using a Bio-Tek Synergy HTX plate reader (Winooski, VT, USA). The analyses were done in triplicate. For each analysis the negative control was xtMC2R transfected alone, and the positive control xtMC2R co-transfected with cMRAP1.
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4

Quantifying Anti-Integrin Antibody Binding

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Synthetic integrin cytosolic peptides (β1-WT, β1-TT/AA, β1-TT/DD, β1-pTpT, β3/β5-pTpT, and Wwc2-pTpT) were dissolved in PBS to a concentration of 500 nM and 100 μl was immobilized on 96-well MaxiSorp plates (Nalge Nunc) overnight at 4°C. The plates were blocked with 200 μl PBS containing 3% BSA for 1 h at room temperature and then washed thrice with 200 μl PBS. Different dilutions of the anti–β1-pTpT antibodies (Thermo Fisher Scientific and Abcam) in 100 μl PBS supplemented with 3% BSA were incubated for 2 h at room temperature. After washing thrice with 200 μl PBS, 100 μl of anti-rabbit-IgG HRP-conjugate was added (1:10,000 in PBS supplemented with 3% BS) and incubated for 1 h at room temperature. The plates were washed thrice with 200 μl PBS, developed with 100 μl of ABTS substrate solution (1-Step ABTS; Thermo Fisher Scientific) before measuring absorbance at λ = 405 nm in a SpectraMax ABS Plus plate reader (Molecular Devices).
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5

Quantitative ELISA for Secreted AGR2

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For P3A5, each well of 96-well plates was coated with 0.2 μg P1G4 in 100 μL PBS overnight followed by rinsing with PBS-0.05% Tween, and blocking with 1% BSA-PBS. Cell-free prostate LuCaP xenograft tissue collagenase digestion media containing secreted AGR2 [42 (link), 43 (link)], diluted 1/10, was added. P3A5 (0.2 μg) or media (100 μL) of transfected 293F cells were used for detection, followed by goat anti-mouse IgG2a-HRP or goat anti-human IgG-HRP (Southern Biotech, Birmingham, AL, USA), where appropriate, diluted at 1:2000 in 1% BSA-PBS followed by 1-step ABTS (Thermo Fisher). Wells were scanned at λ = 415 nm after 5-30 min [13 (link)]. For P1G4, the wells were coated with P3A5. Goat anti-mouse IgG1-HRP for positive control and goat anti-human IgG-HRP were used for detection.
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6

Quantifying Surface P2Y1 Receptor Expression

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HeLa cells transiently transfected with the indicated plasmids were plated in 24-well plates (0.5 x 105 cells/well) and incubated overnight. For siRNA experiments, cells were transfected with plasmid, incubated overnight and then transfected with siRNA. Cells were stimulated with 10 μM ADP for the indicated times, then washed with ice-cold PBS. Cells were then fixed with 4% paraformaldehyde (PFA), washed with PBS and incubated with anti-FLAG antibody for 1 h. Cells were washed and incubated with HRP-conjugated secondary antibody for 1 h at room temperature, then developed using 1-Step ABTS (2,2'-Azinobis [3-ethylbenzothiazoline-6-sulfonic acid]-diammonium salt) (Thermo Fisher). The amount of surface P2Y1 was quantified by determining the absorbance of an aliquot at 405 nm using a Spectramax Plus (Molecular Dynamics) spectrophotometer.
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7

CSFV Domain D/A Peptide Mapping

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A set of 38 overlapping peptides of 15-mer peptides with an offset of two amino acids spanning domain D/A (residues 780–868) of the CSFV TD/96 strain was synthesized (Mimotopes Pty Ltd, Australia). Each mAb (diluted 1:400 in 2%BSA/PBS containing 0.1% sodium azide) was added to each well of the plate with the individual peptides and subjected to shaking and incubation at 20 °C for 1 h. Afterwards, the wells were washed four times with PBS containing 0.1% (v/v) Tween 20 (PBS/Tween 20). Bound antibodies were detected by reaction at 20 °C for 1 h using a conjugate solution that contained a horseradish peroxidase labeled anti-mouse antibody at a dilution of 1:2000 (0.5 μg/mL) (Thermo Fisher Scientific) in 2% BSA/PBS. Wells were washed four times with PBS/Tween 20, followed by two washes with PBS, and subsequently incubated at 20 °C for 45 min with 1-Step™ ABTS (Thermo Fisher Scientific). The absorbance was measured by a plate reader in the dual-wavelength mode at 405 nm against a reference wavelength of 492 nm.
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8

Immunogenicity Assessment of Influenza Vaccines

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Immunogenicity of the vaccines was determined by enzyme-linked immunosorbent assay (ELISA) of sera samples collected on Day 35. HA1 and HA0 influenza B HA recombinant antigens were applied to 96-well plates and incubated overnight at 4°C (1.25 μg/mL). Plates were washed (405 TS ELISA Plate Washer, Agilent Technologies) with PBS plus 0.1% Tween 20 between all steps. After blocking (1% Omniblok, AmericanBio, Inc., and 0.1% Tween 20 in PBS), serum samples from vaccinated mice were plated at a 1:125 dilution followed by two-fold dilutions. Plates were then incubated at 37°C with a HRP conjugated secondary antibody (goat anti-mouse IgG (H+L), Thermo Fisher Scientific). Colorimetric detection occurred at room temperature and measured for absorbance at 405 nm (1-Step ABTS, Thermo Fisher Scientific). Endpoint titers levels were statistical defined per plate (31 (link)) and analysis of variance (ANOVA) tests were conducted with Tukey’s multiple comparisons test to determine group differences.
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