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3 protocols using igm alexa fluor 647

1

Comprehensive Immune Cell Phenotyping

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The following antibodies were used in this study: CD3 AF700, CD4 BV421, CD4 FITC, CD6 APC, CD10 BV605, CD19 APC-Cy7, CD21 PE-Cy7, CD25 PerCP-Cy5.5, CD27 BV421, CD28 PerCP-Cy5.5, CD38 PerCp-Cy5.5, CD45RA APC-Cy7, TCR αβ PerCP-Cy5.5, IL-2 PE, LAT PE, NTAL/LAB APC, and biotin anti–human TCR-Vd2 (BioLegend); TCR-Vd1 APC (Miltenyi Biotec); CD8 APC, CD8 Pacific blue, CD21 PE-Cy7, CD31 PE, CD56 APC, CD69 FITC, CD107a PE, CD127 Alexa Fluor 647, IFN-γ FITC, TCR γδ PE, IgG Alexa Fluor 700, IκBα PE, ERK1/2(pT202/pY204) AF647, and ZAP70(pY319)/SYK(pY352) APC (BD); IgD FITC and IgA PE (SouthernBiotech); CD3 PE-Cy7, CD4 PE-Cy7, CD8 PE, CD16 FITC, CD45RA FITC, CD45 Pacific blue, Vα24 PE, and Vβ11 FITC (Beckman Coulter); CCR7 PE (R&D Systems); Bruton tyrosine kinase/ITK(pY551/pY511) PE, IL-17 PE, IL-4 APC, and ICOS PE (eBioscience); IgM Alexa Fluor 647 (Jackson ImmunoResearch Laboratories, Inc.); and PLCγ1(pY783) and goat anti–rabbit AF647 (Cell Signaling Technology). For immunohistochemistry, CD21 (Dako), CD20 (Invitrogen), CD3 (Cell Marque), CD4 and CD8 (Spring Bioscience), and Bcl-6 (Leica Biosystems) were used. For immunoblotting LAT (sc-7948; Santa Cruz Biotechnology, Inc.), FLAG tag (AHP1074; AbD Serotec), actin (sc-1616; Santa Cruz Biotechnology, Inc.), PLCγ1 (pY783; no. 2821; Cell Signaling Technology), and ZAP70 (pY319; no. 2701; Cell Signaling Technology) were used.
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2

Multiparametric Flow Cytometry of B Cells

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To evaluate the proliferation and differentiation of B cells after stimulation with CpG, cells were stained with the appropriate combination of fluorochrome-conjugated Abs to identify B cell subsets: CD19 BB700 (clone SJ25C1 Becton Dickinson), CD27 PE (clone M-T271 Becton Dickinson), CD38 BV421 (clone HIT2, Becton Dickinson), and IgM Alexafluor647 (conjugated Affinipure F(ab’)2, Jackson ImmunoResearch Laboratories, West Grove, PA, USA). Dead cells were excluded from analysis by side/forward scatter gating. All analyses were performed on a LSRFortessaX-20 (Becton Dickinson, San Jose, CA, USA) interfaced to a FACSDiva software (BD Biosciences, San Jose, CA, USA). Fifty thousand gated events on living cells were analyzed, whenever possible, for each sample.
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3

Phenotypic Analysis of Stimulated B Cells

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After 4- and 7-days of CpG stimulation, PBMC were harvested from the culture plates and washed by centrifugation at 1200 rpm for 5 minutes at room temperature (RT) in wash buffer (2% FBS in PBS). To identify B cell subsets, single-cell suspensions were stained on day 0 and after 4–7 days of stimulation with CpG or incubation with IL-2 alone with the appropriate combination of the following directly conjugated monoclonal antibodies (MoAb): CD19-Alexa Fluor 700 (1∶90 dilution; BD Biosciences, San Diego, CA, USA), CD38-PECy7 (1∶90 dilution; BD Biosciences), CD24-FITC (1∶10 dilution, BD Biosciences), CD27-PE (1∶20 dilution; BD Biosciences) and IgM-Alexa Fluor 647 (1∶400 dilution; Jackson ImmunoResearch, West Baltimore, Pike, PA, USA). The cells were incubated for 20 minutes in the dark at 4°C. After labeling, the cells were washed by centrifugation at 1200 rpm for 5 minutes at 4°C in wash buffer. Data were acquired on a FACSCanto II. Flow cytometry profiles were analyzed using FACSDiva software (BD Biosciences, San Jose, CA, USA). Dead cells were excluded from the analysis by side/forward scatter gating. A minimum of fifty thousand gated events on living cells were collected per data set.
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