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Geneamp pcr system 9700 machine

Manufactured by Thermo Fisher Scientific
Sourced in United States

The GeneAmp PCR System 9700 is a thermal cycler designed for performing polymerase chain reaction (PCR) experiments. It is capable of precisely controlling temperature and cycling parameters to amplify DNA sequences. The machine provides consistent and reliable performance for a wide range of PCR applications.

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3 protocols using geneamp pcr system 9700 machine

1

Quantifying PSA Gene Expression in LNCaP Cells

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LNCaP cells were incubated with the corresponding compounds for 24 h at 37 °C. RNA was isolated from cells using the RNeasy Mini Kit (Qiagen). cDNA was generated using equal concentrations of RNA and the Taqman high capacity reverse transcription kit in the GeneAmp PCR system 9700 machine (Applied Biosystems). Diluted cDNA was combined with the forward primer, reverse primer, SYBR Green PCR Master Mix, and RNase-free water in a 96-well plate. Analysis of mRNA expression was carried out using the ABI 7500 real-time PCR system (Applied Biosystems). All samples were normalized to the level of 18S rRNA (rRNA). The threshold cycles (Ct) for the control (rRNA) and gene of interest were determined, and relative RNA levels were calculated by the comparative Ct method. Real-time RT-qPCR experiments were performed in triplicate with the following primers:
PSA,
forward 5′-GCAGCATTGAACCAGAGGAGTT-3′,
reverse 5′-CACGTCATTGGAAATAACATGGA-3′;
18S rRNA,
forward 5′-AGTCCCTGCCCTTTGTACACA-3′,
reverse 5′-CGATCCGAGGGCCTCACTA-3′.
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2

Detection of TTSuV1a and TTSuV1b Genotypes

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The sample extracted DNA was used for the detection of TTSuV1a and TTSuV1b. Assessment of TTSuV genotypes 1a and 1b from the collected samples was analyzed by amplifying an untranslated region (UTR) of the TTSuV1 viral genome using species specific primers as reported by Segalés et al. [5 (link)]. The amplification was performed on a GeneAmp® PCR System 9700 machine (Applied BioSystems, USA).
The PCR amplicons were resolved on 1.8% agarose in Tris-borate-EDTA- (TBE-) buffered gels stained with ethidium bromide. Ten microlitres of the PCR product from each of the tubes was mixed with 1 μL of 6x buffer and electrophoresed along with a 50-bp DNA molecular weight marker (GeneRuler, MBI Fermentas) at a constant voltage of 100 V for 45 min in 1x TBE buffer. Amplified products were viewed using a Bio-Rad Gel Doc™ XR system. The PCR positive products were purified using Wizard® SV Gel and PCR clean-up system (Promega Corporation, Madison, WI, USA) according to the manufacturers' instructions and eluted in 30 μL EB. The purified products were sequenced by Inqaba Biotec®, South Africa.
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3

Cloning and Sequencing of cry Genes

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All the primers were designed using Primer Premier 5.0 (Premier Biosoft, CA; Table 1). Polymerase chain reaction (PCR) amplification of conserved nucleotide regions for each gene (cry1: Cry1F and Cry1R; cry2: Cry2F and Cry2R) were performed on GeneAmp PCR System 9700 machine (Applied Biosystems, Foster City, CA) using the following conditions: 94°C preincubation for 5 min; 94°C for 45 s, 60°C for 45 s, 72°C for 2 min, for 35 cycles; and 72°C final extension for 10 min. PCR products were inserted into the pEASY-T3 vector (TransGen Biotech, Beijing, China) and sequenced by Taihe Biotechnology Company (Beijing, China).
According to the procedures of rapid amplification of cDNA end technique, the full-length cDNAs of cry genes were obtained. Briefly, the 5′- and 3′-ends of cry genes receptors were amplified using the universal primer mix (BD Biosciences, San Jose, CA) with specific primers (Table 1). PCR thermal cycling conditions were 94°C for 5 min; 35 cycles of 94°C for 30 s, 65°C for 5′-RACE, 65°C for Cry1-3′-RACE, 68°C for Cry2-outer-3′-RACE and 60°C for Cry2-inner-3′-RACE 30 s, and 72°C for 1 min; and 72°C for 10 min. All PCR products were cloned into pEASY-T3 vector and sequenced as detailed already.
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