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4 protocols using tubulin

1

Immunoblotting Protocol for Metabolic Markers

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Immunoblotting was performed as described earlier49 (link) using anti-PIMT (1:1000; Santa Cruz Biotechnology, CA, USA) anti-GLUT4 (1:1000; Novus Biologicals, MO, USA), anti-MEF2A (1:1000; Cell Signaling Technology, MA, USA), anti-PGC-1 (1:1000; Santa Cruz Biotechnology, CA, USA),anti-pSer307-IRS1 (1:1000; Cell Signaling Technology, MA, USA),anti-pTyr608/612-IRS (1:1000; Abcam, MA, USA), anti-IRS1 (1:1000; Cell Signaling Technology, MA, USA), anti-pJNK1/2 (1:1000; Cell Signaling Technology, MA, USA), anti-pAkt (Ser473) (1:1000; Cell Signaling Technology, MA, USA), anti-Akt (1:1000; Cell Signaling Technology, MA, USA) ,anti-ERK1/2 (1:1000; Cell Signaling Technology, MA, USA) and anti-pERK1/2 (1:1000; Cell Signaling Technology, MA, USA) using specific antibodies and appropriate HRP-conjugated secondary antibody. Membranes were stripped and re-probed with β-actin (1:1000, ICN Biomedicals Inc., CA, USA) and Tubulin (1:1000, Genscript, NJ, USA) as the protein loading control.
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2

NQO1 Protein Expression Analysis

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Cells were lysed, and total protein concentrations were measured using a BCA protein assay kit (Biosharp, Hefei, China). Based on the molecular weight of NQO1, 10% separating gel and 4% stacking gel were used for electrophoresis at 130 V for 1 h (Bio‐Rad, USA). Samples were then transferred onto membranes at 220 mA for 90 min, and followed by blocking with BSA for 1 h at RT. NQO1 (CST, Shanghai, China) antibody and internal reference Tubulin (GenScript, USA) antibody were diluted and incubated at 4°C overnight. The membrane was washed three times with TBST (5 min/time), and then was incubated with Goat‐anti‐Mouse IgG HRP Conjugate (CWBio, Beijing, China) at RT for 1 h. After that, the membrane was washed three times with TBST again. Finally, the ECL mixture was prepared, and the results were visualized by the chemiluminescence gel imaging system (JS‐1070P: Peiqing, Shanghai, China), and were analyzed using ImageJ software.
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3

Protein Expression Analysis in 2D and 3D Cultures

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3D-grown MCF-10A and MCF-10A MYC-ER cells were washed with PBS (1X) and the Matrigel was dissolved by incubating slides at 4°C in Cell Recovery Solution (BD Biosciences). 2D-grown MDA-MB231 rTTA3 lines and HCC1806-MYC rTTA3 cells were washed with 1xPBS.Cells were lysed in Laemmli buffer (50 mM Tris-HCl pH 6.2, 5% (v/v) β-mercaptoethanol, 10% (v/v) glycerol, 3% (w/v) SDS). Equal amounts of total protein were loaded on a stain-free 12% SDS-polyacrylamide gel (Biorad), transferred onto a nitrocellulose membrane (Millipore) and blocked in 5% (w/v) milk in Tween 20-TBST (50 mM Tris pH 7.5, 150 mM NaCl, 0.05% (v/v) Tween 20). Blots were incubated with TRA2β (Abcam), SRSF1 (CSHL), SRSF3 (MBL), SRSF7 (MBL), c-MYC (Cell Signaling), Actin (GenScript), Tubulin (GenScript) or β-catenin (ThermoFisher) primary antibodies. IR-Dye 680 anti-mouse or IR-Dye 800 anti-rabbit immunoglobulin G (IgG) secondary antibodies (LI-COR) were used for infrared detection and quantification with a ChemiDoc MP Imaging System (Bio-rad).
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4

Protein Expression Analysis in 2D and 3D Cultures

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3D-grown MCF-10A and MCF-10A MYC-ER cells were washed with PBS (1X) and the Matrigel was dissolved by incubating slides at 4°C in Cell Recovery Solution (BD Biosciences). 2D-grown MDA-MB231 rTTA3 lines and HCC1806-MYC rTTA3 cells were washed with 1xPBS.Cells were lysed in Laemmli buffer (50 mM Tris-HCl pH 6.2, 5% (v/v) β-mercaptoethanol, 10% (v/v) glycerol, 3% (w/v) SDS). Equal amounts of total protein were loaded on a stain-free 12% SDS-polyacrylamide gel (Biorad), transferred onto a nitrocellulose membrane (Millipore) and blocked in 5% (w/v) milk in Tween 20-TBST (50 mM Tris pH 7.5, 150 mM NaCl, 0.05% (v/v) Tween 20). Blots were incubated with TRA2β (Abcam), SRSF1 (CSHL), SRSF3 (MBL), SRSF7 (MBL), c-MYC (Cell Signaling), Actin (GenScript), Tubulin (GenScript) or β-catenin (ThermoFisher) primary antibodies. IR-Dye 680 anti-mouse or IR-Dye 800 anti-rabbit immunoglobulin G (IgG) secondary antibodies (LI-COR) were used for infrared detection and quantification with a ChemiDoc MP Imaging System (Bio-rad).
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