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6 protocols using anti sc35

1

CCND1 Immunostaining in Tumor Sections

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Formalin‐fixed paraffin‐embedded 4‐μm thick tumour sections were subjected to CCND1 immunostaining, according to the manufacturer's instructions. The antibodies (CCND1a, 1:200; CCND1b, 1:150) were incubated overnight. Negative controls used non‐specific rabbit Immunoglobulin G instead of the primary antibody, and a BC pathologist performed a blind evaluation of the immunostained sections. Slides stained with CCND1a and CCND1b antibodies were evaluated and blinded by an independent BC pathologist. Tumours with >50% CCND1a staining were considered CCND1a positive. Since CCND1b is not generally found in normal cells, tumours were considered positive for CCND1b if any cells showed staining in the nucleus.20, 38, 39 Cells were seeded on glass coverslips, fixed using either 3% paraformaldehyde and blocked for 1 h in 4% BSA/PBS followed by incubation in Anti‐SC35 (1:100, Abcam) for 1 h at room temperature. Cells were washed in PBS and incubated in a secondary FITC conjugated antibody (1:200) for 30 min at room temperature. Cells were washed with PBS and counterstained with Anti‐Lamin A (1:500, Abcam). The specimens were examined with a confocal laser microscope (LSM, Carl Zeiss AG).
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2

Immunofluorescence Staining of m6A Regulators

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Cultured mESCs were rinsed briefly in PBS and then fixed and permeabilized with pre-chilled methanol:acetone (1:1, v/v) for 10 min at −20°C, or cells were fixed with PBS containing 4% paraformaldehyde for 10 min at room temperature and then permeabilized with PBS containing 0.1% Triton X-100 for 10 min. Cells were subsequently washed with PBS for three times. Cells were blocked for 30 min with 1% BSA in PBS at room temperature. Primary antibodies were diluted in blocking buffer at different concentrations (see blow) and incubated overnight at 4°C. Washed twice with PBS, cells were incubated with DAPI (dilution 1:2000, Solarbio) and fluorescent dye-conjugated secondary antibodies diluted in blocking buffer for one hour at room temperature and then visualized.
Primary antibodies concentrations: anti-Zc3h13 (1:200, Bethyl); anti-WTAP (1:200, Proteintech); anti-Virilizer (1:200, Bethyl); anti-Hakai (1:200, Bethyl); anti Mettl3 (1:200, Abcam); anti Mettl14 (1:200, Sigma-Aldrich); anti SC35 (1:500, Abcam); anti HA (1:1200, Cell Signaling, Cat#3724); anti HA (1:100, Cell Signaling, Cat#2367).
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Immunofluorescence Staining of Nuclear Bodies

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HeLa cells, treated either with DMSO or compound, were grown on coverslips in DMEM for 24 h at 37 °C before fixing with 4% paraformaldehyde in PHEM buffer for 10 min at room temperature. After rinsing the cells with PBS, the cells were permeabilized with 0.5% Triton X-100 in PBS prior to incubation with the primary antibodies, i.e. anti-SC35 (Abcam, Cambridge, UK), anti-coilin (ProteinTech, Chicago, IL), anti-Y12 (Dundee Cell Products, Dundee, UK), anti-TMG (Calbiochem), and anti-SMN (BD Biosciences). After incubation with the primary antibody for 1 h at room temperature, the coverslips were washed twice with 0.5% of Tween 20 in PBS for 5 min before they were incubated with the dye-conjugated secondary antibody for 30 min. Cells were then stained with DAPI (Sigma), and the coverslips were mounted in Vectashield medium (Vector Laboratories, Peterborough, UK). The samples were visualized using a fluorescence microscope (Zeiss, Jena, Germany; Axiovert-DeltaVision Image Restoration; and Applied Precision, LLC).
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4

Immunostaining of Cytoskeletal Proteins

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The following tubulin antibodies were used: monoclonal anti-α-tubulin (Clone DM 1A) and anti-acetylated α-tubulin (Clone 6-11B-1) (Sigma-Aldrich), monoclonal anti-tyrosinated α-tubulin (YL1/2, Santa Cruz), and polyclonal anti-detyrosinated α-tubulin (Millipore). The following polyclonal antibodies were used: anti-GAPDH (HyTest), anti-Kif5A (Abcam), and anti-TTL (Proteintech Group). The following monoclonal antibodies were used: anti-β-catenin (Sigma-Aldrich), anti-KANK1 (Invitrogen), anti-paxillin (BD Transduction Laboratories), anti-sc35 (Abcam), and anti-vinculin (Sigma-Aldrich). The monoclonal antibody directed against sucrase-isomaltase (SI) (DRBB2/158) was generously provided by A. Quaroni. The plasmid mCherry-Vinculin-N-21 was a gift from Michael Davidson (Addgene plasmid #55160; RRID:Addgene_55160).
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5

Antibody Sources for Protein Analysis

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Specific antibodies were purchased from the following commercial sources: Anti-AFP, anti-ALB, anti-CD44, anti-Evi1, anti-flag (mouse), anti-HA, anti-HNF4α, anti-H3, anti-H3K36me3, anti-Myc, anti-OCT4A, anti-P300, anti-PPM1A (rabbit), anti-pSmad2 (S465/467), anti-pSmad2 (S245/250/255), anti-pSmad3 (s423/425), anti-Smad2, anti-Smad3 (rabbit), anti-SnoN, anti-Sox2, anti-TAT, and normal rabbit IgG from Cell Signaling Technology (Danvers, MA); anti-PPM1A (mouse), anti-SC35, and anti-SETD2 were from Abcam (Cambridge, MA); Anti-Smad4 and normal mouse IgG were from Santa Cruz Biotechnology (Santa Cruz, CA); Anti-β-actin, and anti-flag (rabbit) from Sigma-Aldrich (St. Louis, MO); Alexa594 goat anti-mouse IgG from Life Technology (Carlsbad, CA); Dylight488 goat anti-rabbit IgG from Vector Labs (Burlingame, CA).
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6

Immunohistochemical Analysis of Testicular Tissue

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Testicular biopsy tissue samples were immediately set in optimum cutting temperature compound (Sakura), frozen in liquid nitrogen, and sectioned at 5 mm with a cryotome. Sections were fixed in cold acetone and exposed to primary antibodies (anti-ALKBH5 [10] , 1:200; normal rabbit IgG, Santa Cruz, 1:200; anti-SC35, Abcam, 1:50; anti-FTO, Epitomics, 1:1,000; anti-vimentin, Abcam, 1:100) in 1% bovine serum albumin (BSA)/PBS, followed by fluorochromelabeled secondary antibodies (1:1,000) in 10% BSA/PBS.
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