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16 protocols using ab52631

1

Immunofluorescence Visualization of Extracellular Matrix Regulators

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Cells on slides were fixed in 4% paraformaldehyde/PBS for 30 minutes and rinsed with PBS. After permeabilization with 0.1% Triton X-100/PBS for 10 minutes, the slides were blocked in 3% BSA for 30 minutes. The slides were then incubated with the primary antibodies (anti-MMP1, Catalogue number ab52631, Abcam, 1:100 dilution; anti-TIMP1, ab1827, Abcam, 1:100 dilution; anti-TGFB1, BA0290, Boster, 1:50 dilution; anti-TGFB2, BA0292, Boster, 1:50 dilution; 100μl each) for 2 hours at room temperature. After washing with PBS three times, the slides were incubated with Fluorescein isocyanate (FITC)-conjugated anti-rabbit antibody at room temperature for 1 hour. After mounting (UltraCruz Mounting Medium, SC-24941; Santa Cruz Biotechnology, Inc., USA), the slides were subjected to image acquisitions under a laser scanning microscope (Leica TCS SP5, Leica Microsystems, Exton, PA). The images were then analyzed using the Image-Pro Plus 6.0 (IPP 6.0) software (Media Cybernetics, USA).
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2

Immunofluorescent Staining of Key Proteins

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Immunofluorescent staining was performed using primary antibodies targeting EGR1 (1:100 dilution; ThermoFisher, PA5-83115), MFGE8 (1:100 dilution; ThermoFisher, PA5-82036), MMP1 (1:100 dilution; Abcam, ab52631), α-smooth muscle actin (1:200 dilution; Abcam, ab5694), YAP (1:100 dilution; CellSignaling, 14074 S), and Perilipin-1 (1:100 dilution; Abcam, ab172907). The percentage of fluorescent area was quantified using custom a MATLAB image processing code written by the authors and previously published26 (link). All histology and immunofluorescent images shown are representative images of multiple experiments.
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3

Colonic Tissue Protein Extraction and Western Blot Analysis

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Total protein of colonic tissues was extracted according to the manufacturer’s protocol (Vazyme, USA). Briefly, protein concentrations were determined through BCA Protein Assay Kit (Vazyme, USA). Samples with equal amounts of protein (25 µg) were fractionated on 10% SDS polyacrylamide gels, transferred to polyvinylidene difluoride (PVDF) membranes, and blocked in 5% skim milk in TBST for 1.5 h at 25°C. The membranes were then incubated at 4°C overnight with 1:1,000 dilutions (v/v) of the primary antibodies. After washing the membranes with TBST, the secondary antibodies with 1:1,000 dilutions were added and incubated for another 2 h at 25°C. Protein expressions were examined using an Enhanced Chemiluminescence Detection System. GAPDH was used as a loading control. Antibodies in western blotting were purchased from Abcam (Cambridge, MA, USA), including Col1a2 (ab96723), Col3a2 (ab196613), MMP-1 (ab52631), MMP-3 (ab52915), TIMP-1 (ab86482), E-cadherin (ab76055), N-cadherin (ab202030), Vimentin (ab193555), a-SMA (ab32575), MMP-9 (ab38898) and GAPDH (ab181602).
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4

Immunohistochemical Analysis of Ankle Tissue

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Paraffin-embedded ankle tissue was sectioned and rinsed with PBS after dewaxing. After deparaffinization and the removal of catalase by adding 3% H2O2, the antigen sites were exposed by steaming twice after washing. After antigen retrieval, blocking was performed with serum. After blocking was completed, MMP-1 (Abcam, # ab52631) and MMP-3(Abcam, # ab52915) antibodies were added at 4°C overnight. After removal, the tissue was washed in PBS, followed by incubation with the secondary antibody. After washing in PBS, the color reagent was added. Finally, the specimens were observed and photographed under a microscope [14 ].
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5

Immunohistochemical Analysis of MMP-1, MMP-3, and IL-6

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Paraffin-embedded ACLs were sectioned longitudinally (5 μm thick). In order to perform the staining procedure, first these sections were deparaffinized, rehydrated, and then antigen retrieval was accomplished by 10 mM citrate buffer at 60 °C for 1 h. These sections were incubated with rabbit primary antibodies against MMP-1 (1:100), MMP-3 (1:50), or IL-6 (1:400) at 4 °C overnight, rinsed with phosphate-buffered saline, and incubated with reagents included in the Histofine SAB-PO(R) kit (Nichirei Biosciences Inc., Tokyo, Japan). All sections were visualized using the Olympus BX53 microscope (Olympus, Tokyo, Japan); images were captured digitally using the Leica DFC7000 T digital camera and processed using the Leica Application Suite Ver4.6 imaging software. The primary antibodies used were rabbit anti-MMP1 antibody (1:100, ab52631, lot: GR3261996-3; Abcam, Cambridge, UK), rabbit anti-MMP3 antibody (1:50, ab52915, lot: GR3249690-2; Abcam), and rabbit anti-IL-6 antibody (1:400, ab6672, lot: GR3195128-25; Abcam). The acquired images were analyzed using ImageJ Fiji (https://imagej.net/software/fiji/). Color deconvolution in ImageJ Fiji was used to separate the 3,3′-diaminobenzidine staining, and the mean gray values in the nucleus and cytoplasm were measured and quantified.
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6

Mitochondrial Protein Extraction and Western Blot Analysis

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Using a Cell Mitochondria Isolation Kit (Beyotime, Shanghai, China), we extracted proteins from target cells. The samples were incubated with the following primary antibodies: anti-TGFβ1 (ab21610, Abcam, Cambridge, MA, USA), anti-TGFβ1 (ab64715, Abcam), anti-α-SMA (ab5694, Abcam), anti-p-SMAD2 (ab53100, Abcam), anti-SMAD2 (ab40855, Abcam), anti-MMP1 (ab52631, Abcam), anti-MMP3 (ab52915, Abcam), anti-ACTG2 (SAB1411364, Sigma-Aldrich, St. Louis, MO, USA), and anti-GAPDH (ab8245, Abcam) overnight at 4°C; afterward, the samples were incubated with goat anti-rabbit IgG polyclonal antibody (Abcam) or goat anti-mouse IgG polyclonal antibody (Abcam) for 1 h at room temperature. Visualization was conducted using an enhanced chemiluminescence (ECL) detection system (Thermo Fisher Scientific) using GAPDH levels as an endogenous control.
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7

Hydrogel-Induced Synovial Tissue Response

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The rat synovial tissue was collected following in vivo injection of hydrogels and detected using mouse
monoclonal antibody against IL-6 (ab6672, Abcam) and MMP-1 (ab52631,
Abcam) for 2 weeks. Tissue sections were then deparaffinized, rehydrated,
incubated in citrate buffer, and blocked with 3% H2O2. The sections were then blocked with 1% BSA and stained with
primary antibodies (1:50) overnight. The sections were then incubated
with the secondary antibody against mouse IgG (1:500) for 30 min at
37 °C. Then, the sections were incubated by the streptavidin-HRP
and diaminobenzidine (DAB) substrate. The control group was obtained
following the same procedures but without any hydrogel injection,
and the other contrast groups were low-intensity, moderate-intensity,
and high-intensity hydrogels group, respectively.
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8

Targeted Knockdown of INHBA and MMP1

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OVCAR8 cells were plated in 12-well plates (80,000) or 4-well chamber slides (35,000). The following morning, cells were transfected with a pool of 4 siRNAs directed at non-targeting, INHBA, or MMP1 to a final concentration of 200 nM using Lipofectamine RNAiMax (Invitrogen 13778) per the manufacturer’s protocol. siRNA sequences are provided in Table S2. Knockdown of target genes was confirmed by RT-qPCR. Protein loss following siRNA knockdown was confirmed by immunofluorescence staining for INHBA (1:66, R&D Systems AF338) or MMP1 (1:60, AbCam ab52631) as previously described[17 (link)].
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9

Western Blot Analysis of Extracellular Matrix Proteins

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We extracted the total protein by RIPA lysate. Then, we separated 30 μg protein on 10% protein electrophoresis gel and then transferred it to the PVDF membrane (Invitrogen). The PVDF membrane was blocked with 5% skim milk powder for 1-2 h, and then anti-collagen III (COLIII) (1 : 1000, Abcam, ab184993), anti-α smooth muscle actin (α-SMA) (1 : 500, Abcam, ab5694), anti- matrix metalloproteinase (MMP)-1 (1 : 1000, Abcam, ab52631), anti-MMP-8 (1 : 1000, Abcam, ab81286), anti-NFAT5 (1 : 1000, Abcam, ab3446), antitumor necrosis factor-α (TNF-α) (1 : 1000, Abcam, MA5-23720), interleukin (IL)-6 (1 : 500, Abcam, M620), anti-IL-1β (1 : 500, Abcam, M421B), and anti-β-actin (1 : 1000, Abcam, ab6276) were added and incubated overnight 4 °C. The next day, the PVDF membranes were incubated in HRP anti-mouse IgG for IP (1: 1000, Abcam, ab131368) at 25 °C for an h. The bands were detected using an exposure meter (Bio-Rad, USA) with hypersensitive chemiluminescence (HRP) detection kit (LMAI Bio, Shanghai, China).
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10

Quantifying MMP-1 Expression in Dermal Tissue

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The tissues were fixed in 10% neutral-buffered formalin (BBC Biochemical, Mount Vernon, WA, USA) and embedded within paraffin. The paraffin-embedded samples were sliced into 5 μm sections and histological observation was performed following hematoxylin and eosin (H&E) staining. For immunohistochemistry, tissue sections were stained with an MMP-1 antibody (ab52631, Abcam, Cambridge, MA, USA) at 4 °C overnight. The expression level of MMP-1 in the dermis was quantified by using Image-Pro Plus 7 software (Media Cybernetics, Inc. Rockville, MD, USA).
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