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24 protocols using sm2500

1

Quantification of Tibial Bone Structure

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The control and the in vivo loaded tibiae from fifteen
mice (n=5 mice/age) were cut in the transverse plane at the midshaft with a
microtome (Leica SM2500S, Munich, Germany) into 2.5 µm thick sections
for FTIRI imaging. The control and the in vivo loaded tibiae
from six mice (n=2 mice/age) were microtomed into 10 µm thick sections
in a direction parallel to the longitudinal axis of the long bones for
synchrotron sSAXS measurements. All sections were imaged with fluorescence
microscopy (Leica DMRB, Munich, Germany), before being measured with FTIRI or
sSAXS.
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2

Preparation of Dentin Films from Third Molars

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Non-carious, un-erupted human third molars were collected without associated patient identifiers, and the collection protocol was determined not to be human subject research (NHSR 12-50) by the University Adult Heath Sciences Institutional Review Board. The teeth were stored in 0.96% PBS containing 0.002% sodium azide at 4 °C before use. Roots of teeth were removed 2–3 mm below the cementoenamel junction using a water-cooled low-speed diamond saw (Buehler, Lake Bluff, IL, USA). The remaining tooth was then attached to an aluminum disc by using cyanoacrylate adhesive (Zapit, Dental Ventures of America, Corona, CA, USA). The occlusal 1/3 of the crown and surrounding enamel was removed to result in a dentin block. The 10-µm-thick dentin films were cut from the superficial dentin portion on the block using a microtome (Leica SM2500S, Deerfield, IL, USA). Fifty dentin films were acquired from each tooth for a total of around 400 films with a size of approximately 6 mm × 5 mm when pooled together. The films were stored at 4 °C in 0.96% PBS containing 0.002% sodium azide.
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3

Postoperative Tissue Harvesting and Analyses

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Animals were euthanized using an overdose of sodium pentobarbital at 8 or 16
weeks postoperatively. The bilateral PPT complex was harvested, wrapped using
saline gauze, and stored at –20°C for radiographic and biomechanical
testing.
For the histologic and MLRS analyses, samples were prepared and cut from the
midsagittal plane using a sliding microtome (SM2500S; Leica) fitted with a
tungsten carbide blade (Delaware Diamond Knives). One-half of each sample was
stored at –20°C for MLRS, and the other half, used in the histologic
evaluations, was fixed in 10% buffered formalin for 24 hours and then
decalcified in EDTA for 3 weeks.
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4

Quantification of Tibial Bone Structure

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The control and the in vivo loaded tibiae from fifteen
mice (n=5 mice/age) were cut in the transverse plane at the midshaft with a
microtome (Leica SM2500S, Munich, Germany) into 2.5 µm thick sections
for FTIRI imaging. The control and the in vivo loaded tibiae
from six mice (n=2 mice/age) were microtomed into 10 µm thick sections
in a direction parallel to the longitudinal axis of the long bones for
synchrotron sSAXS measurements. All sections were imaged with fluorescence
microscopy (Leica DMRB, Munich, Germany), before being measured with FTIRI or
sSAXS.
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5

FTIR Analysis of Bone Microstructure

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Tibiae from 12 week-old LC and GorabPrx1 mice (n=5/genotype) were dissected, dehydrated in ascending grades of ethanol, embedded in methyl methacrylate, and cut at the mid-sagittal plane with a microtome (Leica SM2500S, Germany) into 2 μm thick sections. The prepared undecalcified tibial sections were mounted on barium fluoride infrared windows for FTIR imaging (Perkin Elmer Spotlight Imaging System, MA). FTIR imaging was performed at the proximal metaphysis and mid-diaphysis of the tibia to remain consistent with the microCT regions of interest. Due to restrictions related to field of view, only the posterior side of these two regions was analyzed. The regions were scanned using a spectral resolution of 4 cm−1 and a spatial resolution of 6.25 μm. FTIR bone parameters calculated were (Boskey and Pleshko Camacho, 2007 (link)): mineral/matrix ratio (area of 916–1180 cm−1/1590–1712 cm−1); carbonate/mineral ratio (area of 852–890 cm−1/916–1180 cm−1); collagen maturity (peak intensity ratio of 1660 cm−1/1690 cm−1); crystallinity (peak intensity ratio of 1020 cm−1/1030 cm−1); acid phosphate content (peak height 1096 cm−1/1128 cm−1).
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6

Measuring Bone Mineralization Dynamics

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Three- and nine-month-old mice were given calcein via intraperitoneal injection,10 and 3 days before killing. Both femur were fixed in 100% ethanol, embedded in polymethyl methacrylate and sectioned using microtome (Leica SM2500S; knife: Leica VMH400, Nussloch, Germany). A total of 10 μm thick longitudinal section from each femur was analyzed using Olympus microscope. The flourochrome labels were used to assess the bone MARs. We calculated MAR by measuring the mean distance of fluorescent labels, and dividing the distance by the time point at which the labels were administrated. MAR/OB: average thickness of mineral apposition by an osteoblast per day in 1 mm bone surface.
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7

Histological Analysis of Bone-Soft Tissue Interface

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All samples of bone and soft tissue were next fixed in 4% paraformaldehyde, decalcified in a solution of 10% ethylenediaminetetraacetic acid, and embedded in paraffin. The specimens were sectioned coronally along with the long axis of the bone tunnel at a thickness of 5 um by a microtome (SM2500, Leica, Germany). Sections were stained with hematoxylin and eosin and gram staining. Per sample was calculated by averaging the width at whole tunnel’s cross section [17 (link), 21 (link)]. The qualitative analysis performed by two independent observers. All images were photographed under an Olympus AH-2 light microscope (Olympus, Tokyo, Japan).
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8

Histological Analysis of Calvaria Defects

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The calvaria were separated from the cranium, and the specimens were fixed in 4% paraformaldehyde and then dehydrated via a graded series of ethanol treatments (70–100%). Non-decalcified bone specimens were infiltrated and embedded using Technovit® 9100 (Heraeus Kulzer, Wehrheim, Germany). Blocks were cut into 7 µm slices with a microtome (SM2500, Leica, Frankfurt am Main, Germany) before staining. Only sections in the center of the defects were selected. The sections were stained with HES (hematoxylin, eosin, and safranin) and Goldner’s stain and then examined using a light microscope (Axioplan 2; Zeiss, Darmstadt, Germany).
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9

Histomorphometric Analysis of Proximal Tibia Growth

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Formalin solution (Anachemia, Montreal, QC, Canada) was used to fix the proximal sections (~10 mm) from each tibia for a duration of 48h. Thereafter, graded alcohol solutions were used for dehydration, xylene was used for clarification and methylmethacrylate (MMA) (Fisher Scientific Canada, Nepean, ON, Canada) was used for embedding process [35 (link)]. When the polymerization was completed, a microtome (Leica SM2500) setup was used to cut the blocks of the tibiae into 6 μm sections. Only the proximal sections were used in this study. To cover the 40–50% of the growth plate depth, the tibiae were cut along the longitudinal bone axis for 36 slides, six series of six slides, which contain two sections per slide. To facilitate the growth rate measurements, the first slide of each series (6 slides, 12 sections total) per proximal tibia were set aside from light. A microscope (Leica DMR with Retina Qimaging Camera) was used for slice observation while using 5x magnification for growth rate measurements.
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10

Histological Characterization of Graft-Bone Interface

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Immediately after sacrifice, all samples were fixed in 10% neutral buffered formalin for 48 hours, and then dehydrated through an alcohol gradient (30%–100%), cleaned, and embedded in paraffin wax. The samples were sectioned at a thickness of 5 µm perpendicular to the longitudinal axis of the graft with freezing microtome (SM2500, Leica, Nussloch, Germany). These sections were stained with either hematoxylin and eosin stain or Masson’s trichrome stain for histological evaluation. The graft–bone interface was visualized by inverted light microscopy (IX71SBF2; Olympus Optical Co., Tokyo, Japan) and digital images were then analyzed for the bone–tissue interface with a DP Manager (Olympus Optical Co., Tokyo, Japan).
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