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10 protocols using cladribine

1

Cladribine Ameliorates Experimental Autoimmune Encephalomyelitis

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Five days post-immunization, cladribine (10 mg/kg; Merck) was administered daily via oral gavage in 0.5% aqueous carboxymethylcellulose for 5 days (further referred to as ‘cladribine-treated EAE group’). The vehicle group received 0.5% aqueous carboxymethylcellulose for 5 days at the same period (further referred to as ‘vehicle-treated EAE group’). Moreover, an additional control group of naïve mice (without EAE or any oral treatment), further referred to as ‘controls’, was used for ex vivo electrophysiological analysis. Prior to the EAE experiments, titration experiments of cladribine were conducted, indicating 10 mg/kg as the appropriate dose to reach an adequate brain concentration of approximately 80–100 ng/g over a period of 2.5 h (Additional file 2: Fig. S2). This time interval was chosen in advance, as cladribine is rapidly available following oral administration and maximum plasma levels are found within 1 to 2 h of ingestion [8 (link)].
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2

Cladribine Cytotoxicity in Activated T Cells

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TCR-activated cells were incubated for 48 hours with 10-7 M cladribine (Sigma Aldrich, cat. no. C4438) or in the absence of cladribine, as control samples. After the incubation period, the cytotoxic effect of cladribine was immediately assessed by absolute CBC using Sysmex XS 800i Hematology Analyzer, followed by a viability assay using the FACSAria III flow cytometer and Becton Dickinson Horizon™ Fixable Viability Stain 780 (FVS 780, BD cat. no. 565388). Necrotic cells were determined by higher levels of FVS 780, with a 10-20-fold increase in intensity over viable cells.
TCR-activated lymphocytes cultured for 48h with or without cladribine were transferred to a cladribine-free medium with rh-IL2 for up to 7 and 14 days. Lymphocytes were analyzed for viability at day 0 (before culture initiation) and at day 7 or 14, as described above.
The changes in absolute lymphocyte number reflected cell proliferation or depletion in response to the cytotoxic action of cladribine. Survival indexes were established as a ratio between absolute viable cell number without or after cladribine exposure, and initial absolute viable cell number. Proliferation indexes were calculated as a ratio of absolute viable cell number before and after 7 days and 14 days of culture with rh-IL2.
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3

Chemical Library Characterization Protocol

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The chemical library collection consisting of Diversity Set, Mechanistic Set and Natural Products Set used in this work was kindly supplied by NCI/DTP Open Chemical Repository. Clofarabine was purchased from Sigma Aldrich (St. Louis, MO; #C7495) or Selleck Chemicals (Houston, TX; #S1218). Cladribine was obtained from Sigma Aldrich (#C4438 or # 1134200). Clofarabine-5’-triphosphate was purchased from Jena Bioscience (Jena, Germany; #NU-874).
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4

Culturing Human NK-LGL Cell Line

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The human NK-LGL cell line, NKL, was kindly provided by Dr. Howard Young [National Cancer Institute (NCI), Frederick, MD]. Cells were cultured in RPMI 1640 medium with 15% fetal bovine serum (FBS; Atlanta Biologicals, Altanta, GA) and 10 u/ml human recombinant interleukin 2 (IL2; Allergy and Infectious Diseases [AIDS] Research and Reference Reagent Program, National Institutes of Health [NIH], Bethesda, MD) at 37°C and 5% CO2. Cells were harvested during exponential growth phase. SAHA was purchased from Selleckchem (Houston, TX) and cladribine from Sigma-Aldrich (St Louis, MO).
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5

Cytarabine and Analogues Preparation

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Cytarabine (ara‐C) was purchased from Jena Bioscience, Germany (cat no. N‐20307‐5), and Sigma‐Aldrich, Sweden (cat no. C1768), gemcitabine (dF‐dC; cat no. G6423), hydroxyurea (HU; cat no. H8627), triapine (3‐AP; cat no. SML0568), clofarabine (Cl‐F‐ara‐A; cat no. C7495), fludarabine (2‐F‐ara‐A; cat no. F2773) and cladribine (2CdA; cat no. C4438), were purchased from Sigma‐Aldrich, Sweden, and MK‐1775 (cat no. SC‐483196) was purchased from Santa Cruz Biotechnology, USA. Compounds were typically prepared as 10–50 mM stock solutions in DMSO and were stored at −20°C, with the exception of HU which was prepared fresh. Alternatively, when not being used with liquid handling equipment, ara‐C and HU were prepared in water; no difference in EC50 was observed between DMSO and water stocks. N‐acetyl cysteine (NAC; Sigma‐Aldrich) was dissolved in 1 M HEPES solution (Thermo Fisher Scientific) to a concentration of 0.5 M and pH adjusted to 7.2. Prior to use, this stock solution was diluted to 5 mM in complete cell media.
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6

Apoptosis Signaling Pathway Inhibition

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Cladribine (Sigma Co., St. Louis, MO) and entinostat (LC Laboratories, Inc., Woburn, MA) were dissolved in dimethyl sulfoxide (DMSO) to make a stock solution at 250 mmol/L and 200 mmol/L, respectively. The stock solutions were stored at −20°C.
The sources of antibodies for western blot assays were as follows: caspase-3 rabbit mAb (8G10), caspase-8 (1C12) mouse mAb, caspase-9 (Asp353) rabbit mAb, PARP rabbit mAb, P-Histone H2A.X (Ser139) rabbit antibody, Acetyl-Histone H3 (Lys9), Histone H3, P-CHK1 (Ser345) (133D3) rabbit mAb, CHK1 rabbit antibody, P-CHK2 (Thr68) rabbit polyclonal antibody, CHK2 rabbit polyclonal antibody and p21Waf1/Cip1 (12D1) rabbit mAb (Cell Signaling Technology, Inc., Beverly, MA); Cyclin D1 rabbit mAb, E2F-1 mouse mAb (KH95), p27 (F-8) mouse mAb (Santa Cruz Biotechnology Inc., Santa Cruz, CA); β-actin mouse mAb (clone AC-75) (Sigma Co.). All other reagents were purchased from Sigma Co. unless otherwise specified.
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7

Characterization of Bu-resistant AML Cell Lines

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KBM3/Bu2506 is a Bu-resistant AML cell line established in our laboratory [Valdez et al., 2008 (link)]. The OCI-AML3 AML cell line was kindly provided by Dr. Michael Andreeff’s laboratory (University of Texas MD Anderson Cancer Center, Houston, TX), and the HL60 AML cell line was obtained from the American Type Culture Collection (Manassas, VA). Cells were grown in RPMI-1640 medium (Mediatech, Manassas, VA) supplemented with 10% heat-inactivated fetal bovine serum (FBS: Sigma-Aldrich, St. Louis, MO) and 100 IU/mL penicillin and 100 µg/mL streptomycin (Mediatech) at 37°C in a humidified atmosphere of 5% CO2 in air. Cladribine, Flu, Bu and DAC were obtained from Sigma-Aldrich. Clofarabine (Clo, Clolar™; 1 mg/mL solution) and Pano (10 mM solution in DMSO) were purchased from Genzyme Oncology (Cambridge, MA) and Selleck Chemicals LLC (Houston, TX), respectively. Clad and Flu were dissolved in DMSO and stored at −20°C; Bu was prepared fresh in DMSO immediately prior to each experiment.
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8

Dissolution of Anti-Cancer Compounds

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Sorafenib was purchased from LC laboratories (Woburn, MA, USA). Sorafenib was dissolved in DMSO while cisplatin was dissolved in PBS, and carboplatin was dissolved in water. Other TKIs, including cladribine, dasatinib, erlotinib, gefitinib, masitinib, nilotinib, Sorafenib, sunitinib, toceranib, and tozasertib were all purchased from Sigma-Aldrich and dissolved in DMSO.
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9

Monocyte-derived Dendritic Cell Differentiation

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Human PBMCs were maintained in RPMI 1640 growth medium (Life Technologies, Carlsbad, CA, USA), supplemented with 1% glutamine, 1% penicillin, 1% streptomycin and 5% fetal calf serum (FCS; Gibco, Carlsbad, CA, USA), hereafter referred to as complete medium. Differentiation of monocytes to ImDCs and further maturation to mDCs was performed with an Mo-DC differentiation medium (Miltenyi Biotec). Cladribine (Merck, Darmstadt, Germany) and deoxycytidine (Sigma-Aldrich) were dissolved in DMSO and water, respectively, and further diluted to the appropriate concentration in complete medium.
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10

PBMCs Isolation and Cladribine/Deoxycytidine Assay

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Human PBMCs were isolated using standard Ficoll gradient centrifugation. Cells were cultured in complete medium made with RPMI 1640 growth medium (Life Technologies, CA, USA) supplemented with 1% penicillin, 1% streptomycin, 1% glutamine, and 5% fetal calf serum (FCS; Gibco, Carlsbad, CA. USA). Cladribine (Merck, Darmstadt, Germany) and deoxycytidine (Sigma-Aldrich, St. Louis, MO, USA) were dissolved in DMSO and water respectively and further diluted to the appropriate concentration in complete medium
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