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31 protocols using bile extract

1

Comprehensive Analysis of Bioactive Compounds

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Jasmonic acid, yeast extract, ferrozine (3-(2-pyridyl)-5,6-bis-(4-phenyl-sulfonic acid)-1,2,4-triazine), 2,20-azino-bis (3-ethylbenzothiazoline-6-sulphonic acid) (ABTS), α-amylase, pancreatin, pepsin, lipase, α-glucosidase, bile extract, lipoxygenase, linoleic acid, angiotensin converting enzyme, o-phthalaldehyde, p-nitrophenyl acetate, dimethyl sulfoxide, 3,5-dinitrosalicylic acid, p-nitrophenol, protocatechuic acid, syringic acid, vanillic acid, sinapic acid, salicylic acid, caffeic acid, and hydroxybenzoic acid, cyclohexamide, resazurin were purchased from Sigma-Aldrich (Poznan, Poland). The COX Activity Assay kit was purchased from Cayman Chemical company (Ann Arbor, MI, USA). Penicillin and streptomycin were purchased from Life Technologies, Warsaw, Poland. Mueller–Hinton broth, and Mueller–Hinton agar were also obtained (Biomaxima, Lublin, Poland). All other chemicals were of analytical grade.
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2

Antioxidant and enzymatic assays

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Sucrose (α-D-glucopyranosyl-(1→4)-β-D-fructofuranoside), tris (1,3-propanediol-2-amino-2-hydroxymethyl), KCl, NaCl, MgCl2, 90% ethanol, NaOH, guaiacol (2-methoxyphenol), H2O2 (hydrogen peroxide), ABTS (2,2′-azinobis-(3-ethylbenzothiazoline-6-sulfonic acid), lipoxygenase (LOX), xanthine oxidase (XO), xanthine, pancreatin, pepsin, bile extract, linoleic acid, α-amylase, sinapinic acid, apigenin, catechin, and kaempferol were purchased from Sigma–Aldrich (Poznan, Poland). All other chemicals were of analytical grade.
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3

In vitro Digestion of Synthetic sRNAs

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In vitro digestion conditions were as previously described. Briefly, the gastric phase was composed of a gastric electrolyte solution (7.8 mM K+, 72.2 mM Na+, 70.2 mM Cl, 0.9 H2PO4, 25.5 mM HCO3, 0.1 mM Mg2+, 1.0 mM NH4+, 0.15 mM Ca2+) with pH adjusted by 1N HCl to 2.0, and porcine pepsin (80 mg/mL) (Sigma, St. Louis, MO); the intestinal phase was formed by adding to the gastric phase an intestinal electrolyte solution (7.8 mM K+, 72.2 mM Na+, 124.4 mM Cl, 55.5 H2PO4, 85 mM HCO3, 0.33 mM Mg2+, 0.6 mM Ca2+), 24 mg/mL of bile extract (Sigma, St. Louis, MO) and 40 mg/mL of porcine pancreatin (Sigma, St. Louis, MO), and 1 N NaOH to adjust the pH to 7.0. 1 mL PBS solution containing 10 pmoles each of the synthetic sRNAs were first mixed with 1 mL gastric phase and digested with slow rotation at 37 °C for 60 min. The digestion mixture was then mixed with intestinal phase and digested with slow rotation at 37 °C for an additional 75 min. 100 µL of samples were removed at 30 min, 60 min of the gastric phase, and 5 min, 30 min and 75 min of the intestinal phase for analysis of the levels of surviving miRNAs. 100 µL of pre-digestion samples were used as controls for calculating the percentage of surviving miRNAs.
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4

Multistep Gastrointestinal Digestion Procedure

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The upper GI digestion procedure was adapted from Tzounis et al. (47 (link)) and Gaisawat et al. (53 (link)). Oral digestion was performed by addition of α-amylase (2 mL 0.47 g/mL; A3176, Sigma Aldrich, St. Louis, MO, USA) with 5 min incubation at 37°C and pH 7.0, followed by adjusting the pH to 2 and adding pepsin solution (2 mL 0.8 g/mL; P7125, Sigma Aldrich, St. Louis, MO, USA) to simulate gastric digestion at 37°C for 1.5 h. Subsequently, the pH was adjusted to eight using NaOH (1N, Sigma Aldrich, St. Louis, MO, USA) and then 30 mL pancreatic juice [NaHCO3 (12 g/L), bile extract (6 g/L) and pancreatin (0.9 g/L), Sigma Aldrich, St. Louis, MO, USA] were added and incubated at 37°C for 2 h to mimic small intestinal digestion.
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5

Evaluation of Antioxidant Capacity Using H2O2 and Cell Assays

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Hydrogen peroxide (H2O2) was purchased from Bendosen Laboratory Chemicals (Selangor, Malaysia). Pepsin, pancreatin, bile extract, sodium biocarbonate (NaHCO3), fluorescein sodium salt, 2,2′-azobis (2-amidinopropane) dihydrochloride (AAPH), dichloro-dihydro-fluorescein diacetate (DCFH-DA), RPMI 1640 medium, fetal bovine serum, antibiotic, potassium persulphate (K2S2O8), 2,2′-azino-bis[3-ethylbenzothiazoline-6-sulphonic acid] (ABTS) reagent, and 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) powder were purchased from Sigma-Aldrich (St. Louis, MO, USA), while other cell culture materials were purchased from BD Biosciences (NJ, USA).
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6

Extraction and Quantification of Carotenoids

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Reagents for extraction and chromatographic grade solvents were purchased from Thermo Fisher Scientific (Pittsburgh, PA). Fetal bovine serum (FBS) was purchased from Gemini Bio-Products (West Sacramento, CA). Fungizone, penicillin-streptomycin, L-glutamine and non-essential amino acids were purchased from Life Technologies Corporation (Grand Island, NY). DMEM medium with 25 mmol/L glucose, HEPES buffer, bile extract, porcine amylase, pepsin, lipase and pancreatin, apo-8’-carotenal, all-trans-β-carotene (E-βC; > 98% pure), αC (98% pure) and αTC were purchased from Sigma-Aldrich (St. Louis, MO). Phytoene and phytofluene were kindly provided by Dr. Ken Riedl, Nutrient & Phytochemical Analytic Shared Resource (NPASR) at The Ohio State University. All other reagents and supplies were purchased from ThermoFisher Scientific unless otherwise specified.
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7

Pisum sativum Protein Digestion Assay

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Pea seeds (Pisum sativum var. Bajka) were obtained from Company of Horticulture Seeds and Nursery in Ożarów Mazowiecki, Poland. HHL (hippuryl-L-histidyl-L-leucine), pepstatin A, PMSF (phenylmethanesulfonyl fluoride), α-amylase from hog pancreas (50 U/mg, 10080, Sigma), pepsin from porcine gastric mucosa (250 U/mg, P7000, Sigma), pancreatin from porcine pancreas (P7545, Sigma), enalapril, bile extract, and TNBS (2,4,6-trinitrobenzenesulfonic acid) were purchased from Sigma-Aldrich Company, USA, and Amino Acid Standard from Pierce, USA. Any other chemicals were of analytical grade.
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8

Survival of Lactic Acid Bacteria in Simulated GI Tract

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The survival of the lactic acid bacteria to simulated gastro-intestinal (GI) tract conditions was investigated as described previously [17 (link)]. Briefly, each lyophilized strain (2 g, 109 CFU/gr) was rehydrated in 100 ml of demineralized water for 15 min at room temperature. The rest of the experiment was performed at 37 °C in a water bath. The stomach was simulated by adding 1 ml of porcine pepsin solution (7 mg/ml porcine gastric mucosa p7000, Sigma) and decreasing the pH in four steps of 15 min to 4.8, 4.5, 3.5 and 2.5. After 75 min, the entry into the proximal duodenum was mimicked by increasing the pH to 6.5 by adding 0.1 N NaOH and, after 90 min, 10 ml of porcine bile extract solution (80 mg/ml of bile extract, Sigma) and 2 ml of porcine pancreatin solution (50 mg/ml pancreatin, Sigma) were added. After 3 h, bile salts were deactivated by adding 11.5 mM of calcium chloride. The pH was maintained at 6.5 until 6 h, which was the end of the experiment. Samples for the total cell count analysis were taken at the different time points, diluted in phosphate buffered saline and plated in several dilutions on MRS agar plates. Plates were incubated for 48–72 h at 37 °C and thereafter the colony forming units (CFU/ml) were counted. The experiments have been performed in triplicate.
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9

Evaluating Antioxidant and Enzymatic Properties

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Ferrozine (3-(2-pyridyl)-5,6-bis-(4-phenyl-sulfonic acid)-1,2,4-triazine), ABTS (2,2′-azino-bis (3-ethylbenzothiazoline-6-sulphonic acid)) α-amylase, pancreatin, pepsin, bile extract, Folin-Ciocalteau reagent, linoleic acid, ammonium thiocyanate, and haemoglobin were purchased from Sigma-Aldrich Company (Poznan, Poland). All others chemicals were of analytical grade.
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10

Antioxidant and Enzyme Assay Protocol

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Ferrozine (3-(2-pyridyl)-5,6-bis-(4-phenyl-sulfonic acid)-1,2,4-triazine), ABTS (2,2′-azino-bis(3-ethylbenzthiazoline-6-sulphonic acid)), α-amylase, pancreatin, pepsin, xanthine oxidase, lipoxygenase (from Glycine max, type 1_B), bile extract, Folin-Ciocalteau reagent, linoleic acid and ammonium thiocyanate were purchased from Sigma-Aldrich company (Poznan, Poland). All others chemicals were of analytical grade.
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