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Bapta am

Manufactured by Thermo Fisher Scientific
Sourced in United States, Germany, United Kingdom, China

BAPTA-AM is a cell-permeable calcium chelator that can be used to study the role of calcium in cellular processes. It binds to calcium with high affinity and specificity, allowing for the modulation of intracellular calcium levels. The product is commonly used in research applications to investigate calcium-dependent signaling pathways and cellular responses.

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142 protocols using bapta am

1

Analyzing Calcium-Dependent Notch Signaling in ECs

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HAECs were plated on a Y-shaped slide (ibidi #80126). After reaching confluence, cells were exposed to flow (20 dynes cm−2) for 48 h using red perfusion set (ibidi #10962) containing 13 mL of conditioned MCDB-131 with 10% FBS. After 48 h, the cells were treated with 20 µM BAPTA-AM (Life Technologies #B6769) for 20 min. BAPTA-AM was reconstituted in Pluronic F-127 (Invitrogen #P-3000MP) and diluted in MCDB-131 (VEC Technologies #MCDB-131 WOFBS) with 10% FBS (Fisher Scientific, #MT 21-023-CV). After a 20-min incubation with BAPTA-AM, slides were reconnected to perfusion sets and exposed to flow (20 dynes cm−2) for 1 h in the presence of 50 µM DAPT or equivalent volume of DMSO. After 1 h, the slides were removed and fixed with 2% PFA and subsequently imaged for confocal microscopy.
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2

Assessing KCNQ4 Channel Regulation

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Human embryonic kidney line 293 (HEK293T) cells from ATCC authenticated via STR profiling by Eurofins Genomics (ISO 17025) and confirmed negative for mycoplasma via PCR (EZ-PCR Mycoplasma detection kit, Generon, 20-700-20) were cultured to 80% confluence before passaging and used for experimentation between P10 and P40. Cells were grown in Dulbecco’s modified Eagle’s medium (DMEM Gibco) containing penicillin (100 U/mL; Sigma), streptomycin (100 µg/mL; Sigma), and 10% fetal calf serum (Sigma). HEK293 cells were cultured in 24 well plates for 24 hr prior to transfection and transfected with 300 ng of each plasmid using FuGene transfection reagent (Promega), according to the manufacturer’s instructions. Plasmids: hKCNQ4-eYFPc (AF105202) or hKCNQ4CCC/AAA -eYFPc a triple cysteine to alanine mutation in the S2–S3 linker (C156A, C157A, and C158A; Gamper et al., 2006 (link)) were co-transfected with WT CaM or lobe mutants. For BAPTA-AM experiments, cells were incubated with 10 µM cell-permeable BAPTA-AM (B1205 ThermoFisher) for 30 min prior to recordings. Cells were also bathed in 10 µM BAPTA-AM for the duration of the recording.
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3

Intracellular Calcium Imaging Assay

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The cells (1 × 105/well) were seeded on flat‐bottom black 96‐well culture plates. After 24 h, they were incubated in serum‐free Dulbecco’s modified Eagle’s medium for 4 h, washed twice with regular buffer [10 mm HEPES (pH 7.4), 140 mm NaCl, 10 mm glucose, 5 mm KCl, 1 mm CaCl2, and 1 mm MgCl2], and treated with 5 μm calcium crimson in regular buffer for 30 min at 25 °C. For calcium chelation, the cells were incubated with 10 μm BAPTA‐AM (Thermo Fisher Scientific, Waltham, MA, USA) for 15 min in regular buffer at 37 °C and 5% CO2, and then, the BAPTA‐AM loading solution was removed and the cells were treated with calcium crimson as described above. After buffer replacement with calcium‐free buffer [10 mm HEPES (pH 7.4), 140 mm NaCl, 10 mm glucose, 5 mm KCl, 1 mm CaCl2, 1 mm MgCl2, 1 mm EDTA, and 1 mm EGTA], the cells were stimulated with 5 µm caffeine. The level of intracellular calcium was determined with the 590/615‐nm ratio (emission at 590‐nm excitation/emission at 615‐nm excitation) using a multimode microplate reader (BioTek Instruments).
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4

Calcium Chelation Effects on Meiotic Maturation

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Arrested MI oocytes after IVM were treated with 1 or 10 µg of a Ca2+ chelator (1,2-bis(2-aminophenoxy)ethane-N,N,N′,N′-tetra-acetic acid acetoxymethyl ester [BAPTA-AM; Molecular Probes, Eugene, OR, USA]) to investigate the effects of Ca2+ oscillations on the MI-to-MII transition. The oocytes were incubated in Ca2+-free MTF medium containing 5 mg/mL of human serum albumin and BAPTA-AM for 30 minutes in the presence of Pluronic F-127 (Molecular Probes) to aid in loading. Control oocytes were incubated without BAPTA-AM in medium containing an equivalent volume of dimethyl sulfoxide and Pluronic F-127. After BAPTA-AM treatment, those oocytes were inseminated as described above and then their maturity was evaluated by monitoring the appearance of the first PB.
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5

BAPTA-AM Loading of Cells for Calcium Imaging

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Cells were cultured on glass-bottomed tissue culture dishes. Cells were rinsed twice with loading buffer followed by a 25-min incubation with 20 μM BAPTA-AM (Invitrogen, Carlsbad, CA, United States) dissolved in loading buffer supplemented with 2% BSA and 0.01 % Pluronic F-127 (BASF, Sigma, St Louis, MO, United States) on a rolling plate agitator at room temperature. After loading, cells were then washed twice with loading buffer and incubated in serum-free DMEM for 20 min at 30°C to allow the de-esterification.
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6

Autophagy Pathway Inhibition Assay

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The following chemicals and drugs were used to inhibit the autophagy pathway: 20 mM ammonium chloride (NH4Cl) (Sigma) and 100 μM leupeptin (Enzo) to inhibit the lysosome activity; 1 μM (IF) or 10 μM (IB) vinblastine (Sigma) to inhibit the fusion between autophagosome and lysosome. 10 µM FK506 (Sigma) was used to inhibit the phosphatase calcineurin and 10 μM BAPTA-AM (Invitrogen) was used to chelate the cytosolic Ca2+. To inhibit protein translation and synthesis, 10 μg/ml cycloheximide (CHX) (Sigma) was used.
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7

Antibody Validation for Cellular Analysis

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Antibodies were previously validated for the applications used. The dilutions and applications were as follows: Coronin-1a (Abcam, ab53395, 1:400 for immunohistochemistry); Tubb3 (Covance, MMS-435P- 250, 1:400 for immunohistochemistry); Rhodamine Phalloidin (Life Technologies, R-415 1:400 for immunohistochemistry); Phospho-p44/42 MAPK (Erk1/2) Mouse mAb (Cell signaling, #9106, 1:1000 for western blot); pan-p44/42 MAPK(Erk1/2) antibody(Cell signaling, #9102s, 1:1000 for western blot); Anti-Tyrosine Hydroxylase (Millipore, AB1542 1:130 for immunohistochemistry); horseradish peroxidase-conjugated donkey anti-sheep IgG (Fisher/Jackson Immuno Research, NC9754415 1:250); 3,3′-Diaminobenzidine tetrahydrochloride tablet (Sigma, D5905-50TAB, 1 tablet: 20ml for staining); Neurotrophin 3 (Millipore, GF031); U-73122 (Sigma, U6756); GSK3β Inhibitor XIX (Millipore, 361565); Ionomycin (Sigma, I9657); BAPTA-AM (Invitrogen, B-1205); LY294002 (Sigma, L9908); BEZ235 (Selleckchem, S1009); PD0325901 (Selleckchem, S1036).
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8

Iron-Mediated Oxidative Stress Pathways

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Reagents included ammonium iron(III) citrate (Sigma Aldrich, F5879), ferric chloride (Sigma Aldrich, 44939), 2,2-bipyridyl (Sigma Aldrich, 366-18-7), 4,4-bipyridyl (Sigma Aldrich, 533-26-4), hydrogen peroxide (Sigma Aldrich, H10009), CID1067700 (Sigma Aldrich, 1067700), dynasore hydrate (Sigma Aldrich, D7693), bafilomycin A1 (Sigma Aldrich, B1793), nigericin (Sigma Aldrich, N7143), iron dextran (Sigma Aldrich, D8517), BAPTA-AM (Invitrogen, B6769), acridine orange (Calbiochem, 113000), and torin 1 (Tocris Bioscience, 4247). Trans-Ned-19 and a cell-permeant version of NAADP (NAADP-AM) were synthesized as previously described.28,76 (link)
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9

Intracellular Calcium Signaling Modulators

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Reagents included ammonium iron(III) citrate (FAC) (Sigma Aldrich, F5879), 2,2-bipyridyl (Sigma Aldrich, 366-18-7), 4,4-bipyridyl (Sigma Aldrich, 533-26-4) and BAPTA-AM (Invitrogen, B6769). Trans-Ned19 (Ned19) and a cell-permeant version of NAADP (NAADP-AM) were synthesized as previously described [24 (link), 25 (link)] and used at a final concentration of 1 μM (Ned19) or 100 nM (NAADP-AM) for 12 h. The TRPML compounds ML-SA1, MK6-83, EVP21, and EVP22 have been previously described [26 (link)–29 ] and were employed at a final concentration of 5 μM for 12 h.
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10

Ciliogenesis in LLC-PK1 Cells

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LLC-PK1 cells were cultured in DMEM:F12 growth medium containing 5% serum and incubated at 37°C with 5% CO2. Cells were grown to 70% confluency onto coverglass, transfected utilizing Lipofectamine 2000 (Invitrogen) and then starved for 48 hours to induce ciliogenesis. During live imaging, cells were mounted and incubated on an inverted stage fitted with an environmental chamber (Zeiss) that maintained conditions at 37°C with 5% CO2 throughout the experiment. For pharmacological manipulations, media containing the vehicle (0.5% DMSO), 1 μM ionomycin (Sigma), 10 μM BAPTA-AM (Invitrogen), 0.1 μM triptolide (Calbiochem) or 5 μM thapsigargin (Sigma) was added to the perfusion chamber via a standard gravity input and output setup during continuous imaging.
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