The largest database of trusted experimental protocols

6 protocols using ab168863

1

MMP9 Modulates RSV Infection in SAE Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Monolayers of human small airway epithelial (SAE) cells from healthy subjects directly obtained from Lonza (Walkersville, MD, catalogue # CC-2547) were submerged cultured as previously described [22 (link), 23 (link)]. All cells are assayed and test negative for HIV-1, mycoplasma, Hepatitis-B, Hepatitis-C, bacteria, yeast and fungi upon isolation by Lonza. Cells were only used for experiments at passages 3–6 and at a confluency of approximately 70%. SAE cells were transfected by administering silencing RNA (siRNA) specific for p38, MMP9 or negative control scrambled (Scr.) (Qiagen, Gaithersburg, MD). Cells were infected with RSV at a MOI of 0.3 or treated with mock or human MMP9 protein for 24 hours. Human MMP9 (Abcam; ab168863) was activated by incubating with 2mM 4- aminophenylmercuric acetate (APMA; Sigma) at a 9:1 (MMP9:APMA) ratio for 90 minutes at 37°C and inactivated with 2mM EDTA. Active and inactive MMP9 were dialyzed twice in TBS to remove APMA or EDTA prior to treating cells or RSV. RSV was treated with various concentrations of active and inactive MMP9 prior to infecting SAE cells. TCID50 assays were performed to determine the quantity of virus following MMP9 treatment. TCID50 data was calculated using the method of Reed and Munch [24 ]. SAE cells were also treated with active and inactive MMP9 alone and TCID50 assays were performed.
+ Open protocol
+ Expand
2

Evaluating MMP Activities in Cultured VSMCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
MMP activities of cultured VMSCs were evaluated by gelatin zymography. A10 VSMCs were treated for 24 h with SP-8356 in the presence of recombinant human protein CD147 (5 μg/mL, ab155636, Abcam, Cambridge, MA, USA). Conditioned media were collected and centrifuged to remove cellular debris and concentrated by Microcon centrifugal filtration (Millipore, Billerica, MA, USA). These samples were mixed with a non-reducing loading buffer without heating and loaded onto 10% SDS-PAGE gels containing 1 mg/mL gelatin (JT Baker Chemical Co., Phillipsburg, NJ, USA). Proteins were separated by electrophoresis at 125 V for 90 min. A MMP-9 recombinant protein (ab168863, Abcam, Cambridge, MA, USA) was loaded as a positive control. Following electrophoresis, the gels were rinsed twice for 30 min with Novex zymography renaturing buffer (Invitrogen, Carlsbad, CA, USA), incubated overnight with Zymogram developing buffer (Invitrogen), and stained with a Simply Blue Safe Stain (Invitrogen).
+ Open protocol
+ Expand
3

Evaluating Macrophage MMP Activities

Check if the same lab product or an alternative is used in the 5 most similar protocols
MMP activities of macrophages were evaluated via gelatin zymography. Monocyte-derived macrophages isolated from SD rats were treated with SP-8356 on the presence of CypA (200 ng/nl; ab86219, Abcam, Cambridge, MA, USA), functional CD147 antibody (ab119114, Abcam, Cambridge, MA, USA), or mock mouse IgG antibody (sc2025, Santa Cruz Biotechnology, Santa Cruz, CA, USA) for 24 h. Conditioned media were collected, centrifuged to remove cellular debris and concentrated with a Microcon centrifugal filter device (Millipore, Billerica, MA, USA). Samples were mixed with non-reducing loading buffer without heating and loaded onto a 10% SDS gel containing 1 mg/mL gelatin (JT Baker Chemical Co., Phillipsburg, NJ, USA). Proteins were separated via electrophoresis at 125V for 90 min. An MMP-9 recombinant protein (ab168863, Abcam, Cambridge, MA, USA) was loaded as a positive control. Following electrophoresis, gels were rinsed twice for 30 min in Novex zymography renaturing buffer (Invitrogen, Carlsbad, CA, USA) and subsequently incubated with zymogram developing buffer (Invitrogen, Carlsbad, CA, USA). After overnight reaction, the gel was stained with Simply Blue Safe Stain (Invitrogen, Carlsbad, CA, USA).
+ Open protocol
+ Expand
4

Evaluating Corneal MMP-9 Activity by Gelatin Zymography

Check if the same lab product or an alternative is used in the 5 most similar protocols
The activity of MMP-9 in damaged corneas was evaluated by gelatin zymography. The lysates of unfixed corneas were prepared with identical ways described in the western blot method. The lysates with 10 μg of protein were intermingled with a non-reducing loading buffer and subsequently transferred to 10% gelatin acrylamide gels without the heating process. The gels were comprised of 1 mg/mL gelatin powder (JT Baker Chemical Co.; Phillipsburg, NJ, USA) and 0.4% glycerol (Sigma-Aldrich) in 10% SDS-PAGE gel with conventional composition. Corneal lysates were separated by electrophoresis at 200 V for 100 min. As a positive control, 10 μg of MMP-9 recombinant protein (ab168863, Abcam) was loaded. After gel electrophoresis, the gels were washed with zymogram renaturing buffer (Invitrogen) at room temperature with shaking for 1 h twice. Following the renaturing step, gels were immersed in zymogram developing buffer (Invitrogen) for 30 min at room temperature with shaking. Then gels were incubated in fresh zymogram developing buffer for 48 h at 37 °C with shaking. Fully developed gels stained with colloidal blue staining kit (Invitrogen). The images of stained gels captured with a Bio 5000 scanner (Microtek). The quantification of MMP-9 activity was analyzed with ImageJ open source software [53 (link)].
+ Open protocol
+ Expand
5

Cardiac Imaging of MMP9 Effects

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tg(myl7:EGFP; kdrl:mCherry) embryos were raised to 24 hpf then mounted laterally in 0.6% low melt agar. Embryos were injected into the pericardial space with either Cascade blue-dextran tracer (D-1976, Invitrogen) alone or along with 12 pg activated MMP9 protein (ab168863, Abcam). Embryos were left to recover for 15 min then removed from the low melt agar and transferred to fresh embryo water. Embryos were analyzed, fixed with 4% Formaldehyde in PBS, and imaged using a Nikon A1 confocal microscope at 48 hpf.
+ Open protocol
+ Expand
6

Extracellular Matrix Degradation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The MMP degradation assay was adapted from a protocol by Skjøt-Arkil et al.72 (link). The ECM-rich pellet from the CNMCS kit was solubilized in 8 M urea at pH 8 and lyophilized in 200 μg aliquots. The lyophilized ECM was resuspended in 100 mM Tris-HCl, 100 mM NaCl, 10 mM CaCl2, and 2 mM ZnOAc at pH 8.0. (Sigma-Aldrich) MMP-1, MMP-3 (901-MP, 513-MP, R&D Systems, Minneapolis, MN) MMP-2, MMP-9, MMP-13, MMP-14 (ab125181, ab168863, ab134452, ab168081, Abcam, Cambridge, MA), and MMP-7 (CC1059, Millipore) were activated according to the manufacturer’s instructions and mixed individually with 200 μg of tissue per 1 μg of either active enzyme, or MMP buffer was used as a control. Samples were mixed for 18 hours at 37°C, at which point the reaction was terminated with 25 μM of GM6001 (Millipore). Digested protein was run on a Novex 12% Tris-glycine polyacrylamide gel, stained using silver stain (Thermo) and imaged using the IN Genius Syngene Bioimaging platform (Frederick, MD).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!