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Palm microbeam laser micro dissector

Manufactured by Zeiss
Sourced in Germany, Japan, United Kingdom

The PALM MicroBeam laser micro-dissector is a precision instrument designed for laser-based microdissection of biological samples. It enables the isolation of specific cells or regions of interest from heterogeneous tissue samples for further analysis.

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5 protocols using palm microbeam laser micro dissector

1

Cardiomyocyte and Fibrosis Isolation

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For 20 biopsy specimens laser microdissection (LSMD) was performed. Sections 2-μm thick were cut from each case using a new microtome blade for each slide. The PALM MicroBeam laser micro-dissector from Carl Zeiss was used to select and collect cardiomyocytes and fibrotic cells to be studied separately.
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2

Melanoma Cell Isolation and Preservation

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FFPE melanoma samples were prepared by a microtome MR2255 (Leica,Norcross, GA, USA) into7-μm slides (Biovitrum, Moscow, Russia) and dried in Thermostat TS-1/20 (SPU, Smolensk, Russia) for 12 h. To remove the paraffin, the slides were placed in xylene (at a temperature of 39 °C) 3 times for 10 min each time, in alcohol (96 °C) 3 times for 5 min each time, and then in distilled water once for 10 min. Then, the rehydrated sectionswerestained with hematoxylin (Biovitrum) and air-dried. Isolation of tumor cells and adjacent non-cancerous tissue cells was performed on a PALM Microbeam laser microdissector (CarlZeiss, Jena, Germany). Tumor cells were identified as irregular melanocytes with cytological atypia, accompanied by aberrant architectural appearance, and some melanocytes exhibited nuclear atypia. Non-cancerous cells were identifiedout of the tumor nests and morphologically corresponded to fibroblasts, histiocytes and lymphocytes. At least 10,000 tumor cells and 10,000 cells ofhealthy adjacent skin from each slide were separately cut and placed in tubes containing the RNA stabilizer RNAlater® Solution (Thermo Fisher Scientific Inc., Waltham, MA, USA). The isolated cells were stored at − 20 °C.
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3

Quantification of miRNA in DCIS Samples

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Samples with pure DCIS (Cohort 2), with adjacent DCIS and IDC (Cohort 3), and with pure DCIS samples from patients with follow-up (Cohort 4), as well the IDC control samples, were laser micro-dissected (LMD) by using the PALM MicroBeam laser microdissector (Carl Zeiss) on 2 μm thick sections. For each sample, 200.000–600.000 μm2 were selected and micro-dissected samples were loaded on Maxwell 16 (Promega) to extract RNA, following the Maxwell 16 LEV RNA FFPE protocol. RNA was reverse-transcribed for miR-126 and miR-218 using the TaqMan MicroRNA RT kit (Applied Biosystems). cDNAs in Cohort 2 and 3 were pre-amplified using TaqMan PreAmp protocol (Applied Biosystems) and subsequently droplet digital PCR performed using the QX100™ System (Bio-Rad) according to the manufacturer's instructions. QuantaSoft (Bio-Rad) was used to convert the data into concentrations using Poisson distribution. The miRNAs in DCIS samples from Cohort 4 were quantified by Real-Time qPCR using TaqMan MicroRNA assays (Life Technologies) and a Bio-Rad CFX96™ system. Statistical analysis was performed using the non-parametric median test or Mann-Whitney U test for independent samples (SPSS version 21). Two-sided tests were always used and P values ≤ .05 were considered statistically significant.
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4

Immunohistochemical Staining of CRNDEP Epitope

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Immunohistochemical stainings were performed on formalin-fixed, paraffin-embedded (FFPE) and frozen sections of various human tissues. Antigens were retrieved by heating the sections in 0.01 M citrate buffer (pH 6.0) 4 x 5 min. (at 700 W) in a microwave oven. Non-specific tissue and endogenous peroxidase reactivities were blocked with 10% BSA and 3% H2O2, respectively. Sections were incubated at 4°C overnight with the rabbit primary polyclonal anti-CRNDEP antibody, specific to the Epitope 2 (1:800, Abgent, Inc.). Biotinylated secondary goat anti-rabbit antibody (1:1500), peroxidase-conjugated streptavidin (1:500) (both from Immunotech Laboratories, Inc., Monrovia, CA, USA) and DAB were used as a detection system. Specificity of the immunohistochemical reaction was determined by using the synthetic Epitope 2 (originally utilized for rabbits' immunization during the antibody development) as a blocking peptide. The anti-CRNDEP antibody and the blocking peptide (1:3) were incubated for 2h before application. The sections were counterstained with hematoxylin and then examined under the Olympus BX41 light microscope equipped with the DP70 camera (Olympus, Shinjuku, Tokyo, Japan) or the PALM MicroBeam Laser Microdissector (Carl Zeiss AG, Oberkochen, Germany).
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5

Laser-Microdissection of F. hepatica Tissue

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Paraffin-embedded adult F. hepatica (prepared as described by Hanna et al. [55 (link)]) were cut into thick (10 µm) sections (to maximise tissue recovery), placed on polyester membrane steel-framed slides (Leica Microsystems Ltd., Newcastle Upon Tyne, UK), and lightly stained in 1% (w/v) toluidine blue for 2 s at room temperature (18–21 °C) to allow visualisation of the tissue. For LMD, the gastrodermal cells and tegumental syncytium were excised from the tissue sections using an ultraviolet laser on either a LMD7 (Leica Microsystems Ltd., Newcastle Upon Tyne, UK) or PALM MicroBeam Laser Micro-dissector (Zeiss) system and collected in 0.5 mL microcentrifuge tubes. LMD consisted of four independent experiments.
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