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Dh5alpha cells

Manufactured by Thermo Fisher Scientific

DH5alpha cells are a strain of Escherichia coli bacteria commonly used in molecular biology applications. They are designed to be highly efficient in taking up and propagating plasmid DNA, making them a useful tool for cloning and amplifying genetic material.

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7 protocols using dh5alpha cells

1

Introducing Point Mutations in Nter-HNF1β-GFP

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To introduce point mutations in Nter-HNF1β-GFP, we used the QuickChange II protocol (Agilent). In summary, 20 cycles of PCR were carried on pcDNA4TO/Nter-HNF1β with Pfu polymerase (Promega) and a specific set of primers (P256S: 11i122 and 11i123; V265L: 13i94 and 13i95; G287S: 12i64 and 12i65, Supplementary Table S1). Amplicons were ethanol-precipitated and digested over-night by 1 Unit of DpnI at 37°C, and then transformed into DH5alpha cells (Life technologies). Positive clones were sequenced on the full Nter-HNF1β-GFP ORF, and subcloned by a SpeI/BamHI digestion in the original pcDNA4TO/Nter-HNF1β.
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2

Bacterial Transformation and Plasmid Isolation

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The restriction enzymes, polymerase, and T4 ligase enzyme used for cloning and ligation were obtained from NEB. QIAGEN Plasmid isolation, gel extraction and PCR purification kits were used. For transformation, either NEB-5alpha competent E. coli (catalog #C2987H) or competent DH5alpha cells (originally obtained from Life Technologies) were prepared using the standard CaCl2 method of competent cell preparation. Bacterial culture media and agar (BD Biosciences) were prepared according to manufacturer’s instructions. Primers for the experiments were designed using A Plasmid Editor (Ape–version 1.17) and synthesized from Sigma. The primers received were diluted into stocks of 100 pmol/μL. The plasmid was sequenced by Genewiz.
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3

Cloning and Mutagenesis of BRI2 Variants

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The cDNA encoding human wild-type BRI2, and the FBD and FDD mutants forms of BRI2 with the addition of a Kozak sequence and an N-terminal Myc epitope tag were PCR amplified, gel purified, and sub-cloned into pcDNA 3.1 directional TOPO vector (Invitrogen). Plasmids were transformed into DH5alpha cells (Invitrogen), and positive colonies were screened by restriction enzyme analysis and direct DNA sequencing. To introduce an Asp to Ala change at aa 170, site-directed mutagenesis (Agilent Technologies) was done according to the manufacturer’s protocol using primers forward (5′-CTA TGT GAT CCC TCT GGC CAC TTC CAT TGT TAT GC-3′) and reverse (5′-GCA TAA CAA TGG AAG TGG CCA GAG GGA TCA CAT AG-3′).
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4

Cloning and Expression of drTRPM7 Mutants

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Wild type (WT) zebrafish TRPM7 (NP_001025232) was a kind gift from Dr. Michael Elizondo. WT drTRPM7 was restriction digested NotI/NheI and cloned into pcDNA5/TO (Invitrogen) with a hemagglutinin (HA) epitope tag at the N-terminus. All the subsequent mutant versions were cloned into HA-tagged pcDNA5/TO (Invitrogen) for tetracycline/doxycycline-regulated expression using either NotI/SpeI or NotI/KpnI restriction sites. Post cloning, sequencing was carried out to ensure that the coding sequence was in-frame for each construct.
To amplify cDNA for transfection of tetracycline-inducible HEK293 T-REx cells, competent DH5 alpha cells (Invitrogen Cat. No. 18258-012) were transformed with a pcDNA5/TO plasmid (Invitrogen Cat. No. V1033-20) harboring either drTRPM7 wild type (drTRPM7 WT), drTRPM7-1478, drTRPM7-1258 or drTRPM7-1178 truncations.
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5

Mosquito Midgut Microbiota Profiling

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Midgut microbiota families were identified 24 h post-blood meal in each of the three aforementioned mosquito species that were reared in a mixed culture. After dissection, midguts were transferred into separately labelled tubes and kept on ice until the species of mosquito was identified using the PCR method described above. Ten midguts of the same species were pooled, and genomic DNA was extracted using the Wizard® Genomic DNA Purification Kit (Promega, Madison, USA), according to manufacturer’s instructions. Purified gDNA was resuspended in 50 μl of sterile water before PCR amplification. 16S rRNA gene specific primers, 1492r and 27f as described in [32 (link)] were used to amplify partial sequences (>750 bp) of a 16S ribosomal gene from bacterial isolates. Products were cloned into the PCR-Blunt Vector and used to transform DH5-alpha cells (Invitrogen). For each mosquito species, 100 white colonies were selected randomly, and the 16S PCR product was sequenced. ClustalW and NCBI blast software was used to identify the bacterial family from the 16S rRNA sequences.
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6

Episomal DNA Cloning and Sequencing

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Extracted episomal DNA was treated with exonuclease III (Promega) for 2 minutes and cloned into the plasmid pIB/V5-His (Thermofisher). Plasmids were transfected into competent DH5-alpha cells (Thermofisher) and single colonies were grown and sequenced using the plasmid’s primer sites. Capillary sequencing performed was performed and sequences were analysed using nBLAST.
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7

Cloning of RBF1 Protein Domains

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GST-RBF1-large pocket (LP), GST-RBF1-small pocket (SP), and GST-RBF1-C-terminus (C-term) constructs were generated using the pGEX-5x-1 vector (GE Healthcare Life Sciences) backbone digested with BamH1/Xho1 (NEB). LP, SP, and C-term segments of RBF1 was generated by using cDNA of full length RBF1. BamH1 and Xho1 sites were added to primer ends for successful ligation into vector. Primer sequences used for cloning is the following:
Successfully ligated vectors with appropriate inserts were then transformed into BL21 cells (NEB). Empty pGEX-5x-1 vector was used as a GST-alone control which was transformed into DH5-alpha cells (Thermo Fisher).
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