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41 protocols using uv vis spectrophotometer

1

Antioxidant Capacity Evaluation of Oils

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The DPPH radical scavenging assay was performed as described previously with some modification (Cheng, et al., 2013 (link)). In brief, 1 mL of samples was incubated with 3 mL of 0.2 mM ethanol DPPH for 30 mins in the dark. The absorbance of the mixture was measured at 517 nm (Beckman UV–Vis spectrophotometer, California, USA). FRAP was performed as described previously with some modifications (Cheng et al., 2013 (link)). In brief, 2.5 g of oil was extracted with 3 mL of methanol, stirred in the dark for 10 min, then centrifuged at 4500 rpm for 5 min. The extraction steps were repeated three times, and the methanol phase was combined and collected as oil extract sample for subsequent measurement. Fe3+-TPTZ reagent was prepared by mixing 10 mM TPTZ (in 40 mM HCl), 20 mM FeCl3, and 300 mM acetate buffer (pH 3.6) in a ratio of 1:1:10 (v/v/v). 100 μL sample was incubated with 500 μL FRAP reagent for 10 mins in the dark. The absorbance of the mixture was measured at 593 nm (Beckman UV–Vis spectrophotometer, California, USA). The in vitro antioxidant capacity of oil samples was expressed as Trolox equivalent (TE µmol/100g).
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2

Antimicrobial Activity of Novel Bioactive Substances

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A fresh culture of gram-positive bacteria, vancomycin-resistant Staphylococcus aureus Mu50 (S. aureus), and gram-negative bacteria, Escherichia coli K-12 (E. coli) were prepared by suspending a single colony from an LB agar culture in 5 mL of sterile LB medium. The counts of bacteria were determined from reading the optical density of the medium at 600 nm (OD600), measured with a UV/Vis spectrophotometer (Beckman Coulter). The OD600 value was used to calculate the number of bacterial colony-forming units (CFU) per mL.
The measurements of NoBS inhibition zones were done with the disc diffusion method. A 100 μL sample with a bacterial suspension of 106 CFU mL−1 was spread on an LB agar plate, 100 μL of NoBS was added, and the plate was incubated at 37 °C for 24 h.
An in vitro antimicrobial activity test was performed by microplate proliferation assay.[32 (link)] NoBS and oBS were incubated with 500 μL of 107 CFU bacterial suspensions in LB broth medium at 37 °C for 1 h. Subsequently, 200 μL of the solution was transferred to a 96 well plate and incubated for 24 h at 37 °C to monitor the bacterial proliferation, as indicated by the absorbance at 600 nm, with a UV/Vis spectrophotometer (Beckman Coulter).
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3

Murine Kidney RNA Extraction

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Snap frozen murine kidneys were crushed rapidly on ice using a cold mortar and pestle, dissolved in Trizol and sonicated. RNA was extracted with chloroform, centrifugated, pelleted from aqueous phase with isopropanol, washed with 75% ethanol, and re-dissolved in water. After cleaning with RNasin and DNase, RNA samples were further purified using the QIAGEN RNeasy mini kit and the concentration measured using UV/Vis spectrophotometer (Beckman Coulter, Brea, CA). RNA integrity was evaluated by VANTAGE (Vanderbilt Technologies for Advanced Genomics core), and microarray gene expression analysis using the Affymetrix Gene Titan platform was performed by the VANTAGE core according to standardized technique.
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4

Characterization of Metallic Nanoparticles

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TEM images of MNPs were taken on the JEOL-2010F transmission electron microscope. GNRs and MNPs on ITO-coated glass were characterized by Hitachi S5500 scanning transmission electron microscope (STEM). Absorption spectra were collected with a UV–vis spectrophotometer (Beckman Coulter) and Biotek plate reader. Zeta-potential measurements were performed on Zetasizer Nano ZS (Malvern Instruments, UK). Magnetic properties were measured by superconducting quantum interference device (SQUID) in Magnet and Low Temperature Facility at Northwestern University. Magnetization curve was recorded at room temperature with the magnetic field sweeping from −2 to 2 T.
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5

Synthesis and Characterization of Long-LSPR Gold Nanorods

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Gold nanorods of varying aspect ratio (AR) were chemically synthesized using the seed mediated growth method [22 (link)]. To fabricate GNRs with longitudinal surface plasmon resonance (LSPR) wavelengths longer than 850 nm, a bi-surfactant system containing CTAB and NaOL was used in the growth solution (HAuCl4, 1 mM; CTAB, 0.037 M; NaOL, 0.0126 M, AgNO3, 4 mM; and AA, 64 mM) [23 (link)]. GNRs were then purified by centrifugation, twice at 10,000 rpm for 25 min and were redispersed in DI water. Absorption spectra of the synthesized nanorods were measured using UV-vis spectrophotometer (Beckman Coulter). The physical dimensions of the GNRs were characterized by a Hitachi H-7500 transmission electron microscope (TEM) (Hitachi Ltd, Tokyo, Japan), and their surface zeta potential were measured by dynamic light scattering (ZetaSizer NanoZS90, Malvern Instruments, Worcestershire, UK).
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6

Vancomycin-resistant Staphylococcus aureus Bioactivity

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Vancomycin-resistant Staphylococcus aureus Mu50 (S. aureus, ATCC 700699) was used to test bioactivity of MeLyz26 (link). The bacterial culture was diluted to 5 × 107 colony-forming units (CFU) mL−1 with sterile Luria-Bertani (LB). Lysozyme solution was prepared as 0, 0.01, 0.1, 0.5, 1, and 5 mg mL−1 with sterile LB. 500 μL of the bacterial solution was added to 500 μL of lysozyme solution and cultured for 5 h at 37 °C. The counts of bacteria were quantified by measuring the optical density of medium at 600 nm (OD600) by UV/Vis spectrophotometer (Beckman Coulter). Based on the OD600 value, bacterial survival rate was quantified and calculated as bacterial survival percentage.
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7

Bacterial Growth Analysis by OD600

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In this study, bacterial growth was analysed by measuring optical density (OD600) of the culture samples at a wavelength of 600 nm using a UV/VIS spectrophotometer (Beckman, USA).
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8

UV-LED Dose-Response Bacterial Inactivation

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For each experimental condition in the dose response assessment and for comparisons of bacterial inactivation by each of the 13 UV-LED wavelengths, 1 mL prepared bacterial suspension was placed in a 35-mm TC dish (Sarstedt, Nümbrecht, Germany) and exposed to UV irradiation without stirring using the developed UV-LED irradiation device (Fig. 1). The bacterial suspension was irradiated at 0, 2, 4, 6, 8, or 10 mW/cm2 using 254-, 267-, 270-, and 280-nm UV-LEDs. Experiments for comparisons of device conditions under UV-LED irradiation were as follows: WD was changed to 50, 100, and 200 mm; stage materials were changed to a low-reflection coating or without a low-reflection coating; suspension volume was changed to 1 or 6 mL; and absorbance of each bacterial suspensions were diluted to A600 = 2.5 and 0.5 in addition to A600 = 0.5/10.
Here, the transmission spectrum of bacterial solutions from 200 to 700 nm was measured using a UV/Vis-spectrophotometer (Beckman Coulter, Brea, CA, USA). To avoid the possible influence of ambient light such as photoreactivation, the entire process of UV exposure and bacterial inoculation was carried out in a dark place.
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9

Measurement of Glutathione Peroxidase Activity

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GPx activity was measured using the Ransel kit (Randox Laboratories, Crumlin, County Antrim, UK) based on a UV method proposed by Paglia and Valentine [27 (link)]. GPx from the sample of heparinized whole blood catalyses the oxidation of GSH (4 mmol/L) by cumene hydroperoxide (0.18 mmol/L). Oxidised glutathione (GSSG) is converted to GSH in the reaction catalysed by glutathione reductase (>0.5 U/L) in the presence of NADPH (reduced form of nicotinamide adenine dinucleotide phosphate) (0.34 mmol/L), leading to a decrease in absorbance, which was further measured at 340 nm. The optical density was measured using the UV/VIS spectrophotometer Beckman. Heparinized whole blood was previously diluted with diluting agent and Drabkins’ reagent to inhibit the interference of other blood peroxidases. GPx activity was expressed as U/L of haemolysate.
In order to determine GSH concentration and CAT activity, we blended equal volumes of blood and cold distillate water, and then centrifugated the mixture for 15 min at 4000× g (Eppendorf refrigerated centrifuge 5417 R, Eppendorf AG, Hamburg, Germany) to obtain a clear haemolysate.
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10

Comprehensive Particle Characterization Protocol

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UV-Vis-NIR spectra of the particles were obtained using quartz cuvette with a 1-cm light path using a UV-Vis spectrophotometer (Beckman Coulter, Fullerton, CA, USA). The images of particles during synthesis and modification were captured under transmission electron microscope (JEM 1010 JEOL, Tokyo, Japan) by placing aliquots of aqueous particle suspension on carbon-enhanced copper grids and accelerating the machine at 200 kV. The size distribution of the particles was analyzed using a Zeta instrument (ELS-8000, OTSUKA Electronics Co. Ltd., Japan). The X-ray diffraction (XRD) spectra of the particles were measured using XRD (X’Pert-MPD, Philips, Amsterdam, The Netherlands) with Cu-Kα radiation. To analyze the functional groups of the particles at different stages, aliquots of freeze-dried product were mixed with KBr and pelletized for FTIR analysis (Perkin Elmer Inc., Waltham, Massachusetts, USA) at a resolution of 4 cm−1 over the wavelength range 500 to 4000 cm−1. Thermogravimetric analysis was performed using TGA 7, Pyris 1 (Perkin Elmer, MA, USA).
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