The largest database of trusted experimental protocols

5 protocols using accq tag eluent a concentrate

1

Palm Kernel Utilization in Yeast Fermentation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fresh oil palm nuts were obtained from PT Wilmar Nabati, Indonesia. The palm nuts were a hybrid from Dura and Pisifera variety of Elaeis guineensis species harvest in 2016. After the hulls were removed, the PK, with a moisture content of 100 g/kg, was released.
The freeze-dried yeast culture, food grade Y. lipolytica NCYC 2904 was purchased from National Collection of Yeast Cultures (NCYC) (Norwich, UK). It was propagated in sterile yeast malt (YM) broth (2% glucose, 0.25% yeast extract, 0.25% bacteriological peptone and 0.2% malt extract, all w/v, pH 5.0) at 30 °C for 48 h under aerobic conditions to obtain a pure culture with a cell population of about 7 log CFU/mL. Glycerol was added to the pure culture at 15% v/v and it was stored at −80 °C before use.
Standards of sugars including arabinose, xylose, glucose, fructose, mannose, galactose, maltose and sucrose were purchased from Sigma Aldrich (St Louis, MO, USA). Standards of amino acids were obtained from Thermo Scientific (Rockford, IL, USA). Acetonitrile of HPLC grade was acquired from Tedia (Fairfield, OH, USA) and petroleum ether of ACS grade (boiling point of 35–60 °C) and ethanol were purchased from Merck (Darmstadt, Germany). AccQ-Fluor reagent kits and AccQ-Tag eluent A concentrate for amino acids analysis were provided by Waters (Dublin, Ireland).
+ Open protocol
+ Expand
2

Detailed Chemical Reagent Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sulfuric acid, hydrochloric acid, formic acid, perchloric acid, sodium nitrate, sodium hydroxide, potassium hydroxide, potassium chloride, sodium sulfate anhydrous, potassium dihydrogen phosphate, chloramine T trihydrate, trichloroacetic acid, 2-thiobarbituric acid, ethylenediaminetetraacetic acid (EDTA), propylgallate, 4-(dimethylamino)benzaldehyde, petroleum ether (b.p. 40–60 °C), methanol, ethanol, hexane, acetonitrile, 2-propanol, chloroform, sodium methoxide solution, amino acid standard, L-tryptophan, hydroxyproline, L-2-aminobutyric acid, and 1,1,3,3-tetraehoxypropane were purchased from Sigma-Aldrich (Sigma-Aldrich Co., St. Louis, MO, USA).
Supelco 37 comp. FAME mix, linoleic acid methyl ester isomer mix were purchased from Supelco (Supelco Analytical, Bellefonte, PA, USA), trans FAME mix K110 from Grace (Grace, Deerfield, IL, USA).
AccQ Fluor reagent kit and AccQ Tag eluent A concentrate was purchased from Waters (Waters Corp., Miliford, MA, USA). Boric acid was purchased from AFT (Bratislava, Slovakia), Kjeltabs from Velf Scientifica (Velf Scientifica srl, Usmate, Italy).
+ Open protocol
+ Expand
3

Amino Acid Analysis of DM Media

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the variation of amino acid concentrations in DM media, samples were subjected to an AccQ-Fluor Reagent (AQC, 6-aminoquinolyl-N-hydroxysuccinimide carbamate) derivatization (Waters Corp., Milford, MA, United States) according to the manufacturer’s protocol. AQC was reconstituted at a final concentration of 10 mM in acetonitrile, included in the AccQ-Fluor Reagent Kit (Waters Corp.). Briefly, 10 μL of samples were derivatizated with 70 μL of AccQ-Fluor Borate Buffer (Waters Corp.) and 20 μL of reconstituted reagent. The samples were heated to 55°C for 10 min. The amino acids content was analyzed using an HPLC (PU-1580 Intelligent HPLC pump, Intelligent Fluorescence Detector FP-1520 and Intelligent Sampler AS-2055 Plus, with 10 μl loop; Jasco Corp.). Separation of amino acids was obtained using AccQ-TagTM column (3.9 mm × 150 mm) for amino acid analysis (Waters Corp.). A gradient elution was performed maintaining a column temperature of 30°C and using two mobile phases: A (100 ml of AccQ-Tag Eluent A concentrate (Waters Corp.), diluted 1:10 with H2O for chromatography (Sigma-Aldrich, St. Louis, MO, United States) and B (60% acetonitrile and 40% H2O for chromatography) (Sigma-Aldrich, St. Louis, MO, United States) with a flow rate of 1 ml/min. The fluorescence detector was set at excitation wavelength of 250 nm and emission wavelength of 395 nm.
+ Open protocol
+ Expand
4

HPLC Analysis of Amino Acids

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Waters Alliance 2695 HPLC system with a 2475 Multi λ Fluorescence detector (Waters, Milford, MA, USA) was used for the HPLC analysis (excitation at 250 nm and emission at 395 nm). An AccQ•Tag amino acid column Nova-Pak C 18, 4 µm (150 × 3.9 mm) from Waters was used. The column was thermostated at 37 °C, and 10 μL was the injection volume (concentration of amino acids 2.5–250 pmol). The mobile phase consisted of Eluent A (prepared from Waters AccQ•Tag Eluent A concentrate by adding 200 mL of concentrate to 2 L of Milli-Q water and mixing), Eluent B (acetonitrile, HPLC grade), and Eluent C (Milli-Q water). The gradient system used for the chromatography was as follows: The gradient separation program was as follows: Solvent A-100%, B-0%, C-0% runs from 0 to 0.5 min, A-99%, B-1%, C-0% flows from 0.5 min to 18 min of the runs, followed by A-95%, B-5%, C-0% for 1 min. Then, A-91%: B-9%, C-0% runs until 29.5 min of the analysis time and then A-83%, B-17%, C-0% runs to 33 min. A-0%, B-60%, C-40% runs for an additional 6 min and then completed at 36 min (A-100%, B-0%, C-0%). System equilibration was continued for another 10 min with 100% solvent A.
+ Open protocol
+ Expand
5

Quantifying Free Amino Acids in Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The free amino acid content was measured using the method of Kang et al. [15 (link)]. Twenty grams of samples were mixed with 10 mL of 5% trichloroacetic acid and centrifuged at 4 °C for 15 min. Then, it was reacted in a 4 °C refrigerator for 1 h and impurities removed by filtering through a filter (PTFE 13 mm 0.2 μm, Advantec, Irvine, CA, USA). The filtered sample was analyzed and quantified using a liquid chromatography system (Ultimate™ WPS-3000RS, Thermo Fisher Scientific, Waltham, MA, USA) equipped with a reversed-phase column (ACCQ-TAG ULTRA C18 1.7 μm, Waters, Milford, MA, USA). The 10% Waters AccQ-tag Eluent A concentrate was used for mobile phase A, and th 100%Waters AccQ-tag Eluent B concentrate for B. The standard products for quantification were amino acid standard, L-glutamine, L-asparagine, L-tryptophan, γ-aminobutyric acid (Sigma–Aldrich Co., St. Louis, MO, USA), and the total amino acid content was quantified by measuring absorbance at 260 nm.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!