SNU-C5, HT-29, SNU-C2B, COLO-320-HSR, and THP-1 cell lines were cultured in Roswell Park Memorial Institute (RPMI) medium (Sigma-Aldrich) with 10% (v/v) foetal bovine serum (FBS) (Gibco, Carlsbad, California, USA), 2 mM Glutamax (Gibco), 1 mM sodium pyruvate (Sigma-Aldrich), 10 mM N-2-hydroxyethylpiperazine-N-2-ethane sulphonic acid (HEPES) (Sigma-Aldrich), and 2,500 μg/ml glucose (Sigma-Aldrich). THP-1 cells were differentiated using 100 ng/ml phorbol 12-myristate 13-acetate (PMA) (Sigma-Aldrich) for 48 h and PMA withdrawn for 24 h. RPE cell line was cultured in DMEM/F-12 medium (Sigma-Aldrich) with 10% (v/v) FBS, 2 mM Glutamax, and 0.26% sodium bicarbonate (Gibco). HEK293E cell line was cultured in DMEM (high glucose, 4,500 mg/L) (Sigma-Aldrich) with 10% (v/v) FBS, 1 mM sodium pyruvate, and 10 mM HEPES (pH 7.4).
Luria bertani lb
Luria Bertani (LB) is a commonly used growth medium for cultivating bacteria. It consists of a complex mixture of nutrients that support the growth of a wide range of bacterial species. The core function of LB is to provide the necessary components for bacterial growth, including carbon sources, nitrogen sources, vitamins, and minerals.
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33 protocols using luria bertani lb
Bacterial and Cell Culture Protocols
SNU-C5, HT-29, SNU-C2B, COLO-320-HSR, and THP-1 cell lines were cultured in Roswell Park Memorial Institute (RPMI) medium (Sigma-Aldrich) with 10% (v/v) foetal bovine serum (FBS) (Gibco, Carlsbad, California, USA), 2 mM Glutamax (Gibco), 1 mM sodium pyruvate (Sigma-Aldrich), 10 mM N-2-hydroxyethylpiperazine-N-2-ethane sulphonic acid (HEPES) (Sigma-Aldrich), and 2,500 μg/ml glucose (Sigma-Aldrich). THP-1 cells were differentiated using 100 ng/ml phorbol 12-myristate 13-acetate (PMA) (Sigma-Aldrich) for 48 h and PMA withdrawn for 24 h. RPE cell line was cultured in DMEM/F-12 medium (Sigma-Aldrich) with 10% (v/v) FBS, 2 mM Glutamax, and 0.26% sodium bicarbonate (Gibco). HEK293E cell line was cultured in DMEM (high glucose, 4,500 mg/L) (Sigma-Aldrich) with 10% (v/v) FBS, 1 mM sodium pyruvate, and 10 mM HEPES (pH 7.4).
Culturing C. violaceum for Bioreporter Assays
SARS-CoV-2 Pseudovirus Neutralization Assay
Bacterial Strains and Culture Conditions
Cultivation and Antibiotic Selection of Bacterial Strains
S. sanguinis strain SK36 (kindly provided by Dr. Kilian) [27] and its derivatives were routinely cultured in Todd-Hewitt broth (TH, Becton Dickinson, NJ, USA) at 37°C. For a deoxyribonuclease (DNase) assay using agar plates, S. sanguinis strains as well as S. oralis NCTC 11427T/SK23 [27] , S. mutans MT8148 [28] (link), S. salivarius HHT [29] (link), S. parasanguinis ATCC 903 [27] , and S. sobrinus MT10186 [30] (link) were cultured in Brain Heart Infusion (BHI) broth (Becton Dickinson). The Escherichia coli strain TOP10 (Life Technologies, CA, USA) served as a host for derivatives of pSET6s and pAT18 [31] (link), [32] (link). The E. coli strain XL10-gold (Stratagene, CA, USA) was utilized as a host for the pQE30 derivatives (Qiagen, Germany). E. coli strains were cultured in Luria-Bertani (LB, Sigma Aldrich, MO, USA) medium at 37°C with constant agitation. Lactococcus lactis NZ9000 (kindly provided by Dr. Poolman) and its derivatives were grown in M17 broth (Becton Dickinson) containing 0.5% glucose (M17G, Wako, Japan) at 28°C. To select mutant strains, antibiotics were added to the media at the following concentrations: ampicillin (Wako); 100 µg/ml for E. coli, chloramphenicol (Sigma Aldrich); 10 µg/ml for E. coli and 5 µg/ml for S. sanguinis, and erythromycin (Sigma Aldrich); 150 µg/ml for E. coli and 1 µg/ml for L. lactis.
Bacterial Infection of Intestinal Organoids
Strains | Relevant characteristic(s) | Source or reference |
---|---|---|
Strains MC1061 | E. coli hsdR mcrB araD139 Δ(araABC-leu)7679 ΔlacX74 galU galK rpsL thi | [46 (link)] |
STm | S. enterica subsp. enterica ser. Typhimurium 14028 wild-type strain | ATCC |
Isolation and Maintenance of Pseudomonas Strains
HEK293 Cell Culture and Plasmid Transformation
Bacterial Strain Cultivation Protocols
see
E. coli and S. enterica cells were grown
at 37 °C in Luria-Bertani (LB, Sigma-Aldrich, USA) agar plates,
supplemented, when needed, with kanamycin (50 μg/mL, Roth) or
streptomycin (50 μg/mL, AppliChem). E. coli strains were fluorescently labeled with plasmid pGFP, S. enterica strains were fluorescently labeled with
plasmid pM965. A. Vinelandii cells
were grown on standard B media42 at 28
°C, the cells were tagged with GFP using the bjGFP plasmid, media
were supplemented with tetracycline (10 μg/mL, Sigma-Aldrich,
USA) if needed. V. natriegens was grown
on a LB3 medium (LB + NaCl fc. 3% w/v) at 37 °C and fluorescently
labeled using a sfGFP plasmid, and the expression was induced over
night with anhydrotetracycline (500 ng/mL, Adipogen. USA). For experiments,
all strains were grown to stationary phase via incubation for 48 h,
except E. coli strain ΔaroC ΔAAimporters, which was incubated
for 20 h at 28 °C.
Characterization of NorA Efflux Pump Mutants
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