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Lightcycler480ii

Manufactured by Tiangen Biotech

The LightCycler480II is a real-time PCR instrument designed for quantitative and qualitative gene expression analysis. It features a 96-well plate format and supports a variety of fluorescent detection chemistries. The instrument provides precise temperature control and sensitive fluorescence detection for reliable and reproducible results.

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2 protocols using lightcycler480ii

1

Serum miRNA Profiling by qPCR

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Serum total RNA was isolated using the miRcute serum/plasma miRNA isolation kit (TianGen, Beijing, China) and reverse transcribed using a miRNA First‐Strand cDNA Synthesis kit (TianGen) according to the manufacturer's instructions. Because of the the lack of a stable endogenous serum miRNA, samples were spiked with a synthetic Caenorhabditis elegans mir‐39 miRNA mimic (cel‐mir‐39) as a control to monitor changes in RNA recovery. The real‐time qPCR was performed in a Roche LightCycler480II using the miRcute miRNA Detection Kit (TianGen). Relative expression of target miRNAs was calculated using the comparative 2‐ΔΔCt method with external control. In virtue of the lack of a stable endogenous serum miRNA, samples were spiked with a synthetic C. elegans mir‐39 miRNA mimic (cel‐mir‐39) as a control to monitor changes in RNA recovery. cel‐mir‐39 was the external control. Primers for miR‐26a, miR‐30b, miR‐30c, miR99a, miR100, miR181a, and the external control were designed by the authors. Primer sequences of these miRs as follows:miR‐30b‐5p: 5'‐GCGTCCTGTAAACATCCTACACTCAGCT‐3'miR‐99a‐5p: 5'‐GCGTAACCCGTAGATCCGATCTTGTG‐3'miR‐100‐5p: 5'‐GCGTAACCCGTAGATCCGAACTTGTG‐3'miR‐181a‐5p: 5'‐GCGTCCAACATTCAACGCTGTCGGTGAGT‐3' The universal reverse primer and primers for miR‐26a and miR‐30c were purchased from TianGen (Beijing, China).
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2

qPCR-Based miRNA Expression Analysis

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qPCR was performed using a LightCycler® 480II and Tiangen SYBR Green PCR Kits. U6 was used as the endogenous control for miRNA amplification. The reaction volume was 25 μL, and was set up according to the TB GreenTM Premix Ex TaqTMII protocol. All samples and blanks were analyzed in triplicate. The reaction conditions were as follows: pre-denaturation at 95 °C for 30 s, followed by 95 °C for 5 s and 60 °C for 30 s for 40 cycles. The melting curves were generated using the following temperatures: 95 °C for 5 s and 60 °C for 1 min. Relative miRNA expression level was calculated using the 2-△△Ct method and normalized to U6 levels.
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