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Alexa 488

Manufactured by Vector Laboratories
Sourced in United States

Alexa 488 is a fluorescent dye produced by Vector Laboratories. It is a cyanine-based dye that can be used to label proteins, nucleic acids, or other biological molecules for fluorescence-based detection and imaging applications.

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2 protocols using alexa 488

1

Immunohistochemical Analysis of Antioxidant Proteins

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In both ND and ED noise-exposed and ND-CTR and ED-CTR unexposed rats, the right cochleae were cryoprotected in 30% sucrose in PBS, frozen at −70 °C by immersion in a 2-propanol/dry ice bath, and further encased in a 15% sucrose and 10% gelatin solution. Blocks were sectioned parallel to the modiolus in a cryostat at a thickness of 20 mm. Sections in the modiolar plane were mounted serially on gelatin-coated slides and processed for immunohistochemistry. After several rinses in PBS containing 0.2% Triton X-100 (Tx), sections were incubated for 1 h in PBS-Tx (0.2%) with 10% normal goat serum (NGS). Next, sections were incubated overnight in a humid chamber at 4 °C with the corresponding primary antibodies (anti-CAT, GPX1, SOD1, and BCL-2; see Table 2) diluted in a solution containing PBS-Tx (0.2%), pH 7.4. The next day, after four 15 min rinses in PBS-Tx (0.2%), sections were incubated for 2 h in the corresponding fluorescent secondary antibody conjugated to Alexa 488 (1:200, Vector Laboratories, Burlingame, CA, USA) and also in biotinylated phalloidin (Pha) which was then visualized with streptavidin conjugated to Alexa 594 (Molecular Probes, Eugene, OR, USA). Finally, sections were counterstained with DAPI nuclear staining and cover slipped. Immunofluorescence was visualized using a laser scanning confocal microscope as outlined in the previous section.
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2

Histological Analysis of Neuronal Markers

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DRGs (L5 for SNL and lumbar for STZ-induced DM) of the experimental animals were embedded in paraffin, sectioned for 5 µM sections and probed after deparaffinization with isolectin Griffonia simplicifolia (IB4) conjugated with Alexa 488 (1:200; Vector Laboratories, USA) and antibodies against CGRP (1:10 000, Peninsula Laboratory, USA). To visualize bound CGRP primary antibodies, slides were incubated with biotinylated Goat Anti-Rabbit IgG Antibody (Vector Laboratories, USA) and ABC-peroxidase conjugate (VECTASTAIN Elite ABC-Peroxidase Kit antibody, Vector Laboratories, USA) followed by chromogenic visualization with DAB staining kit (Vector Laboratories, USA) according to the manufacturer’s instructions. In the slides labeled with IB4-Alexa488, nuclei were stained with DAPI. The slides were mounted with Immu-Mount (Thermo Scientific, USA) or Coverquick 2000 (VWR, Finland) and imaged with fluorescent (Zeiss Imager M2 Axio, Carl Zeiss, Germany) or bright-field (Olympus BX-61, Olympus, Japan) microscopes. The number of marker-positive neurons in a section of a DRG was calculated manually and normalized to the total number of sensory neurons in this section. The results of the analysis of two to four sections per ganglion were averaged and used in further calculations.
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