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11 protocols using o glcnac

1

Quantifying Oxidative Stress Markers

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Antibodies to G6PDH (#8866), Transketolase (#8616), PHGDH (#13428), SHMT2 (#12762), Catalase (#12980), SOD1 (#4266), GPX1 (#3206), PRDX2 (#46855), GLUT1 (#12939), GLUT4 (#2213), GFAT1 (#3818), O-GlcNAc (#9875), Ribosomal protein L7a (#2415), Ribosomal protein S3 (#9538) were obtained from Cell Signaling Technology (Beverly, MA). Antibodies to HSP60 (#MA3-012), and ISPD (#PA5-25854) from Thermo Fisher (Waltham, MA); FKRP (#sc-374642), TALDO (#sc-365449) and ALDR (#sc-166918) from Santa Cruz Biotechnology (Santa Cruz, CA); Anti-4HNE (#46545) from Abcam (Cambridge, MA) and; α-Dystroglycan (IIH6C4) (#05-593) from EMD Millipore (Burlington, MA). Amersham Protran 0.45 μM nitrocellulose membrane (#10600003) and ECL Prime western blotting detection reagent (#RPN2232) from GE Healthcare Life Sciences (Germany). LI-COR Odyssey blocking buffer, IRDye 680RD Donkey anti-mouse (#926-68072) and, IRDye 800CW Donkey anti-rabbit (#926-32213) from LI-COR (Lincoln, NE). NADP/ NADPH Assay kit (#ab176724) from Abcam (Cambridge, MA) and OxyBlot Protein Oxidation Detection kit (#S7150) from Millipore Sigma (Darmstadt, Germany).
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2

Antibody Validation for Western Blot and IHC

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Antibodies were purchased from the indicated sources: GLUL (Sigma G2781,1:1,000 for IB, 1:800 for IHC; Abcam, ab73593,1:1,000 for IB; BD 610517,1:1,000 for IHC), β-tubulin (Sigma T9026, 1:10,000 for IB), Hsp90 (Millipore 07–2174,1:2,000 for IB), GAPDH (Cell Signaling #97166, 1:1,000 for IB), DLST (Abnova H00001743-D011:1,000 for IB), IDH2 (ProteinTech 15932–1-AP, 1:1,000 for IB), PCNA (Cell Signaling 13110, 1:8,000 for IHC), O-GlcNAc (CTD110.6, Cell Signaling #9875, 1:100 for IHC), GOT1 (Proteintech 14886–1-AP, 1:1,000 for IB), PSAT1 (Proteintech 10501–1-AP, 1:1,000 for IB), GLUD1 (Proteintech 14299–1-AP, 1:1,000 for IB).
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3

Protein Isolation and Western Blotting

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For protein isolation and western blotting, cells were washed with 1X PBS and lysed in radio-immunoprecipitation assay (RIPA) lysis buffer (25 mM Tris-HCl pH 7.6, 150 mM NaCl, 1% NP-40, 1% sodium Deoxycholate, 0.1% SDS supplemented with protease inhibitor tablets). Protein quantification and western blotting were carried out as previously described (36 (link)). Antibody against MUC1 has been previously described (51 (link)). Antibodies against GRP78, CHOP, NRF2 and O-GlcNAc were from Cell Signaling Technology. CDA antibody was from Santa Cruz Technology (Dallas, TX USA).
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4

O-GlcNAc Modification Quantification

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Lysates were fractionated using Criterion precast 4% to15% or 4% to 20% gels (Bio-Rad). Proteins were transferred to PVDF, blocked in 5% bovine serum albumin in Tris-buffered saline tween 20 for 1 hour, washed, and incubated overnight at 4˚C with the appropriate antibody. Antibodies used included O-GlcNAc (Cell Signaling Technology; catalog #9875), GAPDH (Santa Cruz; catalog #sc-32233), OGA (Novus, catalog #NBP-81244), OGT (Cell Signaling Technology; catalog #24083), and DDK (Origene; catalog #TA5011-100). Incubations with the O-GlcNAc antibody were permitted to incubate for 48 hours. The antigen-antibody interaction was visualized with enhanced chemiluminescence (Clarity Reagent; Bio-Rad Laboratories, Inc.) using a ProteinSimple Fluorochem E imaging system (Santa Clara, CA). Blots were quantified using Image J software (NIH, Bethesda, MD).
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5

Protein Expression and Phosphorylation Analysis

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O-GlcNAc (1:1000, #12938S), OGT (1:1000, #23177S), AKT (1:1000, #90272), phospho-AKT (Ser473) (1:1000, #12694), PFKFB2 (1:1000, #13045), phospho-PFKFB2 (Ser483) (1:1000, #13064), phospho-GSK3β (Ser9) (1:1000, #9323), AS160 (1:1000, #2670), phospho-mTOR (Ser2448) (1:1000, #5536), and LC3A/B (1:1000, #12741) antibodies were purchased from CST (Cell Signaling Technology, Danvers, MA, USA). Anti-GSK3 beta (1:8000, #ab32391) and Anti-TBC1D4 (phosphor T642) (1:5000, # ab131214) antibodies were purchased from Abcam (Amyjet Scientific Inc., Upper Heyford, UK). Bax (1:2000, #60267-1-lg), Bcl-2 (1:2000, #60178-1-lg), caspase-3 (1:500, #66470-2), and mTOR (1:1000, #20657-1-AP) antibodies were purchased from Proteintech (Rosemont, IL, USA). Secondary antibodies were labeled with horseradish peroxidase goat anti-mouse IgG (1:20,000, # SA00001-1, Proteintech, USA), goat anti-rabbit IgG (1:20,000, #SA00001-2, Proteintech, USA), and goat anti-mouse IgG, IgM, IgA (1:10,000, ThermoFisher, Munich, Germany, #A-10668).
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6

Western Blot Assay for AMPK Signaling

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Western blot assay was carried out referring to a previous publication [24 (link)]. Antibodies, including AMPKα (cat. no.2532), phosphor-AMPKα (Thr172) (cat. no. 2531), ACC (cat. no.3662), phosphor-ACC (Ser79) (cat. no.3661), and O-GlcNAc (cat. no.9875), were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH) antibodies (cat. no. 309154) and HRP-conjugated secondary antibodies were purchased from Golden Bridge Biotechnology (Beijing, China).
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7

Antibody Validation for Western Blot and IHC

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Antibodies were purchased from the indicated sources: GLUL (Sigma G2781,1:1,000 for IB, 1:800 for IHC; Abcam, ab73593,1:1,000 for IB; BD 610517,1:1,000 for IHC), β-tubulin (Sigma T9026, 1:10,000 for IB), Hsp90 (Millipore 07–2174,1:2,000 for IB), GAPDH (Cell Signaling #97166, 1:1,000 for IB), DLST (Abnova H00001743-D011:1,000 for IB), IDH2 (ProteinTech 15932–1-AP, 1:1,000 for IB), PCNA (Cell Signaling 13110, 1:8,000 for IHC), O-GlcNAc (CTD110.6, Cell Signaling #9875, 1:100 for IHC), GOT1 (Proteintech 14886–1-AP, 1:1,000 for IB), PSAT1 (Proteintech 10501–1-AP, 1:1,000 for IB), GLUD1 (Proteintech 14299–1-AP, 1:1,000 for IB).
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8

Antibody Sources and Dilutions for Western Blot

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Antibodies that recognize GFAT1 (ab125069, 1:1000), p38α (ab59461, 1:1000), TTLL5 (ab187697, 1:1000), TAB1 (ab76412, 1:1000) and β-actin (ab8227, 1:1000) were purchased from Abcam. Antibodies that recognize p62 (sc-28359, 1:1000), O-GlcNAc (sc-59623, 1:1000) LC3B (sc-271625, 1:1000) and p-p38 (sc-7973, 1:1000) were obtained from Santa Cruz. Antibody against Flag (F1804, 1:1000) was purchased from Sigma. Antibodies against p-MAPKAPK-2 (#3044, 1:1000), p-JunB (#8053, 1:1000), p-Acc (#11818, 1:1000), AMPK (#2603, 1:1000), JNK (#9252, 1:1000), p38α (#9218, 1:1000), p-AMPK (#50081, 1:1000), p-JNK (#4668, 1:1000), p-MKK3/6 (#9231, 1:1000), LC3B (#3868, 1:1000), p-p38 (#4511, 1:1000), His (#9991, 1:5000), GST (#5475, 1:5000) and O-GlcNAc (#9875, 1:1000) were purchased from Cell Signaling Technology. Antibodies that recognize TAB1 (D122651, 1:1000), HA (D191044, 1:1000) were purchased from Sangon Biotech. Antibody GT335 was purchased from Adipogen. Antibodies that recognize p38α (#48644, 1:1000) and β-actin (#49294, 1:1000) were purchased from Signalway Antibody. Phospho Ser438 TAB1 antibody (AF8324, 1:1000) was purchased from Affinity. GFAT1 antibody (14132-1-AP, 1:1000) and Caspase 3 antibody (19677-1-AP) were purchased from Proteintech.
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9

Western Blot Analysis of Protein Expression

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Cultured HUVECs were collected and lysed with lysis buffer containing 98% RIPA lysis buffer, 1% protease inhibitor, and 1% phosphatase inhibitor. The cells were incubated with the lysis buffer on ice for 30 min. The total protein concentration in the lysate was measured using the BCA protein assay kit from Beyotime Biotechnology, Shanghai, China. Equal amounts of protein from each sample were loaded onto SDS-PAGE gels and separated by electrophoresis. The proteins were then transferred onto polyvinylidene fluoride (PVDF) membranes and blocked with PBST containing 5% skim milk blocking buffer at room temperature for 2 h.
Primary antibodies, including O-GlcNAc (Cell Signaling Technology, #9875), GSDMD (Santa Cruz Biotechnology, sc-393581), GSDMD (Abcam, ab209845), β-actin (SAB, #21338), GAPDH (Proteintech), OGT (Santa Cruz Biotechnology, sc-74546), Myc Tag (Invitrogen, # R951-25), OGA (Proteintech, 14711-1-AP), were incubated with the membranes followed by incubation with HRP-conjugated secondary antibodies (anti-rabbit IgG from Bioword, and anti-mouse IgG from Bioword). Protein bands were detected using an Enhanced Chemiluminescent (ECL) reagent from Thermo Scientific, and the images were acquired with a ChemiDoc MP System from Bio-Rad. Densitometric analysis was performed using ImageJ Software to quantify the protein bands.
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10

Protein Isolation and Western Blotting

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For protein isolation and western blotting, cells were washed with 1X PBS and lysed in radio-immunoprecipitation assay (RIPA) lysis buffer (25 mM Tris-HCl pH 7.6, 150 mM NaCl, 1% NP-40, 1% sodium Deoxycholate, 0.1% SDS supplemented with protease inhibitor tablets). Protein quantification and western blotting were carried out as previously described (36 (link)). Antibody against MUC1 has been previously described (51 (link)). Antibodies against GRP78, CHOP, NRF2 and O-GlcNAc were from Cell Signaling Technology. CDA antibody was from Santa Cruz Technology (Dallas, TX USA).
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