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4 protocols using anti human cd28 cd49d

1

CMV-specific T-cell Immune Response

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Peripheral blood was collected in heparin coated tubes. Whole blood was either stimulated with CMV cell lysate (10 µg/mL) or control lysate (10 µg/mL, HEL-299) (both Lophius Biosciences) for six hours in the presence of anti-human CD28/CD49d (1 µg/mL, clones L293 and L25, BD Biosciences, Heidelberg, Germany). If cytokine production of antigen specific T-cells was determined, Brefeldin A (Sigma Aldrich, Munich, Germany) was added after the first two hours of incubation. Following incubation, whole blood was lysed (FACS lysing solution, BD Biosciences) and permeabilized (FACS Permeabilizing Solution 2, BD Biosciences). Cells were then stained for lineage markers (anti-human CD3, Pacific Blue, clone UCHT1, and anti-human CD4 APC, clone 13B8.2, both Beckman Coulter Krefeld, Germany; anti-CD8 APC-H7, clone SK1, BD Biosciences) and IFN-γ (anti-IFN-γ, FITC, clone 45.15, Beckman Coulter). If CD154 expression was determined on antigen-specific T-cells, whole blood was washed after six hours of incubation and then stained for the above-mentioned lineage-markers, as well as for CD154 (anti-human CD154 FITC, clone 24–31, Biolegend, San Diego, CA, USA). Whole blood was lysed (VersaLyse, Beckman Coulter) and washed twice. Samples were then measured with a flow cytometer (Navios, Beckman Coulter). Data was analyzed using Kaluza Software Version 1.5a (Beckman Coulter).
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2

T-cell Functionality Evaluation Protocol

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To evaluate T-cells function, cells were incubated with 5 μg/mL antigenic peptides in the presence of brefeldin A (7.5 μg/mL) (Sigma-Aldrich), anti-human CD28/CD49d as costimulatory reagents (1 μg/mL) (BD Biosciences) for 4 hours. Subsequently, cells were stained for surface markers, then fixed, and permeabilized for intracellular staining using Foxp3 staining buffer set from eBiosciences according to the manufacturer’s instructions. Permeabilized cells were then incubated with IFNγ, IL-2, TNFα (BD Biosciences), Ki67 (BioLegend) antibodies (BD Biosciences) and resuspended in PBS 2% FBS 1% PFA before acquisition. For degranulation potential, BD GolgiStop solution, anti-CD107a and anti-granzyme B (BD Biosciences) were used. T cells treated with phorbol 12-myristate 13-acetate (PMA; 50 ng/ml) and ionomycin (500 ng/ml) (Sigma-Aldrich) were used as positive controls. Acquisition was performed with a LSRII flow cytometer and data were analyzed using Flowlogic software.
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3

RABV-Specific T Cell Characterization

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Functional RABV-specific CD4+ and CD8+ T cells were assessed by surface and ICS in a subset of individuals (Supplementary Table 2, Supplementary Figure 2) if sufficient amount of PBMCs were obtained. For each donor, 0.5–1 × 106 PBMCs per well were cultured for 6 hours at 37°C, 5% CO2 in a 96-well U-bottom plate in the presence of the GlyRAb peptide pool (see AIM, Monensin (Biolegend), 2 µM) and 100 µg/mL anti-human CD28/CD49d (BD Bioscience). Afterward, cells were stained for 20 minutes at 4°C with Zombie Aqua Fixable Viability kit (Biolegend), surface makers were stained for 30 minutes at 4°C, cells were fixed and permeabilized for 30 minutes with True-Nuclear™ Transcription Factor Buffer Set (Biolegend) and finally intracellular markers were stained for 30 minutes at 4°C (Supplementary Table 3). Stained cells were resuspended in FACS buffer and analyzed using a FACSAria Fusion. Antigen-specific CD4+ and CD8+ T cells were measured subtracting the unstimulated control from the peptide-stimulated sample (Supplementary Figure 2).
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4

Activation and Degranulation of CD8+ T Cells

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Peripheral blood mononuclear cells were stimulated with a mixture of phorbol myristate acetate at 25 ng/mL and ionomycin at 1 μg/mL (Sigma Aldrich, St. Louis, MO) along with costimulatory signals using antihuman CD28/CD49d (BD BioSciences, San Jose, CA). Nonspecific CD8+ T-cell activation and degranulation was determined by measuring intracellular IFN-γ and surface CD107a and CD107b as described above.
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