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6 protocols using perm wash reagent

1

Flow Cytometric Analysis of γδ T Cells

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Cells were stained in 'FACS buffer' (PBS with 0.1% sodium azide, 2% FBS and 1 μM EDTA) with antibodies to TCRγδ (GL3), TCRβ (H57-597), IL17A (eBio17B7), Ccr6 (140706), IL7Rα (A7R34), CD3ε (clone 145-2C11), CD11b (clone Mac-1), Vγ4 (clone UC3-10A6), CD90.2 (30-H12), S1pr1 (R&D, MAB7089, clone 713412), anti-CD169 (clone MOMA-1 and clone Ser4); anti-scart2 antibody was kindly provided by Dr. Klaus Karjalainen. Molecular Probes Monoclonal Antibody Labeling Kits (Invitrogen) were used to directly conjugate antibody to Alexafluor647 or Pacific Blue dyes. During analysis, singlets were gated based on peak FSC-H/FSC-W and SSC-H/SSC-W. These gates encompassed more than 90% of total events and were set sufficiently wide to include singlet events of variable size while avoiding the main doublet peak.
To detect IL-17A, cells were stimulated for 3 hr with 50 ng/ml phorbol 12-myristate 13-acetate (PMA, Sigma) and 1 µg/ml Ionomycin (I, EMD Biosciences) or 3 hr with 10 ng/ml IL1β and 10 ng/ml IL23 in Golgi plug (BD Biosciences) at 37°C, stained for surface antigens, treated with BD Cytofix Buffer and Perm/Wash reagent (BD Biosciences), and stained with anti-IL-17A.
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2

Lymphocyte Immunophenotyping in Mice

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Each mouse lymph nodes and spleen were minced separately and passed through a 70 μm cell strainer to obtain single-cell suspensions. Single cells from the draining lymph nodes were used for the detection of innate immune cells and were stained with the following monoclonal antibodies: F4/80-PerCP-Cy 5.5, CD11c-PE, CD11b-APC, and Ly6G-FITC (BD Biosciences, USA). The γδT and Th17 cells from the spleen samples were detected with the following fluorescent antibodies: CD45-PerCP-Cy 5.5, γδT-PE, CD4-APC, and IL-17A-PE (BD Biosciences, USA). For the surface antigen staining, cells were incubated with the antibodies for 30 min at room temperature (RT) after washing the cells with PBS. To stain the intracellular cytokines, the cells were stimulated with a cell stimulation cocktail (eBiosicence) for 4 h. After that, the cells were stained for surface antigens and then fixed with BD Cytofix buffer, permeabilized by using Perm/Wash reagent (BD Biosciences) and then stained with anti-IL-17A antibodies. The cells were acquired using an LSR II Flow Cytometer (BD Biosciences), and the data were analyzed using the Flow Jo software version 7.0 (Tree Star, California, USA).
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3

Quantifying β-catenin Protein Levels

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The β-catenin protein levels in transfected SW480 cells were measured using flow cytometry. Cells were trypsinized, fixed in 10% formaldehyde/1× PBS for 20 min, and then permeabilized with 1× Perm/Wash reagent (BD Biosciences, San Jose, CA). Antibody staining was in 1× Perm/Wash with mouse anti–β-catenin (1:1000; BD Transduction) followed by goat anti-mouse Alexa 647 (1:1000; Life Technologies). Stained cells were analyzed on an Accuri C6 Flow Cytometer, and the mean fluorescence intensity of GFP-positive cells was determined. At least 10,000 total cells were analyzed per sample, and four independent experiments were performed. The mean fluorescence intensity of transfected cells was first normalized to that of untransfected cells to account for staining variability between samples. These values were then normalized to the GFP-only control. Student’s t test was used to determine the statistical significance of the averages of different mutants.
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4

Apoptosis Assay with Active Caspase-3

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After staining with surface marker antibodies (Ter119 and CD71), cells were fixed in 4% buffered formaldehyde (20 min at 4°C), washed and permeabilized using Perm/wash reagent (BD Biosciences). Permeabilized cells were stained with FITC-conjugated rabbit anti-active caspase 3 antibody (clone C92–605) for 30 min at room temperature, washed and subjected to FACS analysis.
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5

Pluripotency Marker Expression in iPSCs

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For staining, iPSCs were grown in 96-well imaging plates (CellCarrier, PerkinElmer) in E8 medium. After 3 days, cells were fixed with Cytofix reagent, followed by blocking and permeabilization with PermWash reagent (both from BD Biosciences). Then, cells were incubated with the dye-conjugated antibodies anti–TRA-1-60–Vio488 (Miltenyi Biotec, REA157, 130-106-872), anti-SSEA4–PerCP-Vio700 (Miltenyi Biotec, REA101, 130-105-053), anti-OCT3/4 (Isof. A)–APC (Miltenyi Biotec, REA338, 130-105-555), and anti-NANOG (D73G4)–PE (Cell Signaling Technology, 14955). Nuclei were stained with Hoechst 33342 (2.5 μg/ml in PBS; Invitrogen). Images were captured using an Operetta high-content imaging system (PerkinElmer).
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6

Detecting Kidney IL-17A+ Cells

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Cells were stained with antibodies against TCRgd (GL3), CD4 (GK1.5), B220 (RA3–6B2), CD45 (30-F11), IL-17A (TC11–18H10.1), hNGFR (ME20.4), CD90.2 (53–2.1), CD11b (M1/70) Ly6G (1A8), CD11c (N418), F4/80 (BM8), MHCII (M5/114.15.2) (from Biolegend, BD Biosciences or eBiosciences). To determine the source of IL-17A in kidneys, dissociated cells were incubated for two hours in MACS buffer supplemented with PMA (50 ng/ml) and ionomycin (500 ng/ml) with GolgiStop (1000X). To detect intracellular IL-17A, cells were treated with BD Cytofix buffer and Perm/Wash reagent (BD Biosciences) and then stained with anti-IL-17A (C57BL/6J) or anti-hNGFR (SMART17 C57BL/6J) in Perm/wash buffer. Samples were analyzed by FACS (BD), and data were analyzed with FlowJo software (Version 10, BD, https://www.flowjo.com/).
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