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3 protocols using mettl16

1

Molecular Mechanisms of RNA Modifications

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FLAG-tagged full length and the mutants of FLAG-A3B were amplified and integrated into pLVX-3Flag vector. FLAG-FTO was purchased from Sino Biological Inc. FLAG-FTO R96Q was generated by site-directed mutagenesis (NEB). As, FB23-2, Actinomycin D, and DAPI were purchased from Sigma Aldrich. Anti-ALKBH5, METTL3, METTL14, METTL16, YTHDF2, p53, and GAPDH were purchased from ProteinTech Group; anti-γH2AX (phospho-ser139) was obtained from Millipore; anti-FLAG antibody was purchased from Sigma; anti-A3B and FTO were purchased from CST.
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2

Western Blot Analysis of Protein Modifications

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The total protein was extracted using a RIPA kit (Huaxing Bio, Beijing, China), and then the protein concentration was quantified using a bicinchoninic acid (BCA) kit (Thermo Fisher). Protein samples (25 ug) were separated on electrophoresed in polyacrylamide gels and transferred onto polyvinylidene difluoride membranes (Millipore, MA, United States). After blocking in 5% skimmed milk at room temperature for 1 h, membranes were incubated with primary antibodies against FTO (Proteintech, Wuhan, China), METTL16 (Proteintech), YTHDF2 (Abcam), CBLL1 (Proteintech), and GAPDH (Huaxing bio) at 4°C overnight. The membranes were incubated with HRP-conjugated secondary antibodies (Huaxing Bio) for 1 h and visualized by an enhanced chemiluminescence blotting kit (Cwbiotech, Jiangsu, China). The intensities of the bands were quantified using Quantity One software (Bio-Rad, CA, United States). GAPDH was used as the internal control.
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3

Western Blot Analysis of m6A Regulators in HCC

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HCC specimens were collected during surgery. The proteins separated on gels after electrophoresis are transferred to PVDF membranes and subsequently incubated with primary and secondary antibodies. The following primary antibodies were incubated for 12 h at 4 °C: GAPDH (1:10,000, ABclonal), YTHDF1 (1:1000, ABclonal), YTHDF2 (1:1000, ABclonal) and YTHDF3 (1:1000, ABclonal), KIAA1429(1:1000, Proteintech), METTL3(1:1000, Proteintech), RBM15(1:1000, Proteintech), ZC3H13(1:1000, Proteintech), METTL16(1:1000, Proteintech), ALKBH5(1:1000, Proteintech), METTL14(1:1000, Proteintech), WTAP(1:1000, Proteintech), HNRNPC(1:1000, Proteintech), YTHDC1(1:1000, Proteintech), YTHDC2(1:1000, Proteintech), FTO(1:1000, Proteintech). The secondary antibody (1:5000, ABclonal) was incubated for 2 h at room temperature. Immunoreactive bands were developed using an enhanced chemiluminescence detection kit (Genview Scientific Inc., USA). All experiments were performed in triplicate.
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