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3 protocols using beta actin

1

Setdb1 Knockdown Immunoblotting Protocol

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The cells were transfected with Setdb1 siRNA for 48 h. Approximately 30 μg protein was separated by 8–12% SDS-PAGE and transferred to PVDF membranes (Millipore). The membranes were probed using the following primary antibodies: NOX4 (1:500; NB110-58849; Novus), beta-Actin (1:2000; CW0096; CWBIO), SETDB1 (1:1000; 11231-1-AP; Proteintech), E2F1 (1:500; sc-193; Santa Cruz Biotechnology), FOXO4 (1:500; sc-5221; Santa Cruz Biotechnology), Lamin B (1:500; sc-6217; Santa Cruz Biotechnology), JNK (1:500; sc-7345; Santa Cruz Biotechnology), p-JNK (1:400; WL01813; WanleiBio), γH2AX (1:000; 2577; Cell signaling technology), p38 (1:500; sc-7972; Santa Cruz Biotechnology), and p-P38 (1:500; sc-17852-R; Santa Cruz Biotechnology). All were used as the manufacturer’s recommendation. The secondary antibodies were horse radish peroxidase-linked anti-mouse, anti-rabbit, or anti-goat IgG for 2 h at room temperature. The membranes were visualized on a Bio-Rad Chemidoc XRS using a Western Bright ECL Kit (Bio-Rad, Berkeley, CA, United States).
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2

Acetylation analysis of TMV proteins

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Proteins were isolated from
samples that had been inoculated with PBS and TMV solutions at different
time points. We used a commercial antibody against acetylation on
Western blot analysis as previously reported.26 (link),45 (link) The proteins were isolated by sodium dodecyl sulfate–polyacrylamide
gel electrophoresis (SDS–PAGE) and then transferred to a polyvinylidene
fluoride (PVDF) membrane (Immobilon-P, Merck Millipore, United States).
The TMV coat protein (cp) antibody (Agdia, Elkhart, United States),
anti-rabbit secondary antibody (CWBIO, Beijing, China), and beta-actin
(CWBIO, Beijing, China) antibody were used for the analysis. Anti-acetyl-lysine
was used as a primary antibody (Micron Bio, Hangzhou, China) and the
anti-mouse secondary antibody conjugated to HRP (CWBIO, Beijing, China).
The Western blot results were analyzed using ImageJ (v.1.52a, NIH,
Bethesda, USA).
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3

Protein Quantification and Western Blotting

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Total proteins were collected using RIPA buffer (Thermo Scientific, CA, USA) and then quantified for protein quantification by using Pierce™ BCA Protein Quantification Kit (Thermo Scientific) [15 (link)]. Protein (20 μg) was used for electrophoresis loading SDS-PAGE and transferred onto PVDF membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% skimmed milk and incubated with primary antibodies, including anti-KIAA1429 (Cell Signaling Technology, 1:1000, #88,358), anti-ROCK2 (Cell Signaling Technology, 1:1000, #47,012), and beta-actin (CWBio, Beijing, China). After incubation by primary antibodies or their corresponding secondary antibodies, blots were developed using SuperSignal West Dura Persistence Substrate (Thermo Scientific).
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