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7 protocols using ibandronate

1

Calcifying Extracellular Vesicle Mineralization

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Calcifying EVs were washed and concentrated using centrifugal filtration. The final vesicle suspension volume was adjusted to achieve a vesicle concentration four times that of the original vesicle concentration in conditioned media. The 3D collagen platform consisted of collagen hydrogels (5% type I collagen in 0.1% FBS calcifying medium) cast onto amino-silanated glass coverslips, as detailed in SI Appendix.
EVs were incubated for 8 d at 37 °C either with coverslip-adhered collagen hydrogels or in suspension. At the assigned time points, 0.4 mM ibandronate in water (Sigma-Aldrich) or an equivalent volume of water (untreated control) was added to the appropriate samples (final ibandronate concentration 0.05 mM). EV mineralization in suspension was quantified using a fluorescent-based mineral-binding dye (Lonza, OsteoImage), with results for Fig. 5B normalized using the average of the “no treatment” group for each biological replicate (n = 5 biological replicates).
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2

Preparation and storage of statin compounds

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Stock solutions of atorvastatin (kindly provided by Pfizer, Sandwich, UK), fluvastatin (kindly provided by Novartis, Basel, Switzerland), pravastatin (kindly provided by Bristol‐Myers‐Squibb, Paris, France), lovastatin and simvastatin (kindly provided by Merck Sharpe and Dome, Ballydine, Ireland) were prepared as described.25 Such stocks were aliquoted and stored at −80°C. Alendronate, ibandronate, MVA, GGPP, FPP, squalene, coenzyme Q10, latrunculin B, and perillic acid were purchased from Sigma (St. Louis, MO, USA). Y‐27632 and U‐46619 were purchased from Cayman Chemical Company (Ann Arbor, MI, USA).
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3

Bisphosphonate Dose-Dependent Effects

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The human CCD-1064Sk epithelial fibroblast cell line was treated for 24 h with zoledronate (Sigma-Aldrich, St. Louis, MO), alendronate (Sigma), or ibandronate (Sigma-Aldrich) at doses of 10-5, 10-7, or 10-9 M, which are within the therapeutic dose range.10 (link)
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4

Simvastatin and Ibandronate Effects on NADP/NADPH

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Cells were cultivated in cell culture flasks at 37°C and 5% CO2. The culture media were as recommended by the American Type Culture Collection (ATCC) for MDA-MB-231 breast cancer DMEM (Sigma-Aldrich, St. Louis, MO, USA), which contained 10% fetal calf serum (FCS); PC-3 prostate carcinoma DMEM-F12 (Sigma-Aldrich) with 10% FCS. MG-63 and U2-OS osteosarcoma were cultured in AlphaMEM (Biochrom, Berlin, Germany) medium containing 10% FBS. For the HMC1.1 cell line, we used Iscove's Modified Dulbecco's Medium (IMDM; Thermo Fisher Scientific, Waltham, MA) supplemented with 260 nM thioglycerol (Sigma-Aldrich) and 20% fetal bovine serum (FBS). All culture media contained 10 μg/mL gentamycin (Sigma-Aldrich). To guarantee optimal growth, cells were split two times a week and reseeded at a density of 2−5 × 105 cells/mL.
One day after splitting, 32 μM simvastatin (Sigma-Aldrich) or 150 μM ibandronate (Sigma-Aldrich) were added to the culture medium for 72 hours. This is the dose that attenuated cell proliferation with a half maximal effect (EC50) (data not shown).
NADP/NADPH analyses were performed directly in 96-well culture plates after 24 or 48 hours, according to the manufacturers' instructions of the NADP/NADPH Glo Assay (Promega, Madison, WI, USA).
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5

Bisphosphonate Preparation and Use

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Zoledronate used in in vitro experiments was kindly provided by Novartis Pharma (Basel, Switzerland). Clodronate, Pamidronate, Ibandronate were purchased from Sigma Aldrich (St. Louis, MO, USA), as well as Zoledronate used in in vivo studies. The structure of bisphosphonates is depicted in Figure 1. Bisphosphonate stock solutions were prepared in distilled water, adjusted to pH 7.4 and filter-sterilized prior to use. Empty liposomes and Clodrolip were prepared as described before [43] (link). Other reagents were purchased from Sigma Aldrich. All solutions were prepared in distilled water and filter-sterilized prior to use.
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6

Rat-Tail Collagen Extraction and Assays

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Type I collagen extracted from rat-tail, Monocrotaline (MCT) and Ibandronate (IB) were purchased from Sigma‐Aldrich (St. Louis, MO, USA). Collagenase II was purchased from Biosharp (Shanghai, China). The Rac1 Activation Assay Biochem Kit™ was acquired from Cytoskeleton (Denver, CO, USA). EGM™-2 BulletKit™ was obtained from Lonza (Walkersville, MD, USA). Anti-FDPS was purchased from Abcam (Cambridge, MA, USA). GAPDH as the loading control was purchased from MultiSciences (Hangzhou, China). Other unspecified antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA).
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7

Generating Fluvastatin Dose-Response Plates

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Plates with different concentrations of fluvastatin (brand Lescol; Novartis) were made according to the protocol described in previous studies (Mörck et al. 2009 (link); Rauthan et al. 2013 (link)). Additional compounds used in this study were: rosuvastatin (Crestor; AstraZeneca); mevalonolactone (Sigma); ibandronate (Sigma); paraquat (Sigma); and NAC (Sigma). These were dissolved in water except for rosuvastatin, which was dissolved in DMSO.
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