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3 protocols using ab138498

1

Characterization of Trim59 regulation

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Mouse Trim59, Trim27, WASH, and control siRNAs were purchased from Ribo, Shenzheng, China. Anti- Trim59 (ab69639, Abcam), anti-Trim27 (A6405, Abclonal), anti-WASH (SAB-4200552, Sigma), anti-Oct4 (ab18976, Abcam), anti-FLAG (M20008, Abmart), anti-HA (#T501-1, Signalway Antibody), anti-Ub (YT4793, Immunoway), anti-K48 (#4289, Cell Signaling Technology), anti-K63 (BML-PW0600, Enzo), anti-ACTR2 (ab134082, Abcam), anti-MYH9 (ab138498, Abcam), anti-CAPZA1 (ab166892, Abcam), anti-CAPZB (ab175212, Abcam), anti-β-actin (SC-81178, Santa), Phalloidin-iFluor 488 (ab176753, Abcam), DAPI (#4083, Cell Signaling Technology), Alexa Fluor 488 Conjugate (#4416, #4408, Cell Signaling Technology), and Alexa Fluor 594 Conjugate (#8890, #8889, Cell Signaling Technology) antibodies were purchased.
Murine FL Trim59 clone was obtained from the ATCC. Trim59 mutants were constructed by performing PCR with four primers according to a previous method33 (link). All primers used in this study are listed in supplementary Table S2b. YFP–WASH and YFP-WASH K220R mutant were from Patrick Ryan Potts, UT Southwestern Dallas, TX 75390, USA; plasmids encoding hemagglutinin (HA)-tagged ubiquitin (HA-Ub), HA-K48-Ub, and HA-K63-Ub were obtained from Y. Xiong (University of North Carolina, Chapel Hill).
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2

Comprehensive Protein Extraction and Analysis from NP Cells

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Total protein was extracted from human NP cells by RIPA lysis buffer containing protease inhibitor (Beyotime). Nuclear and cytoplasmic proteins were extracted from NP cells by a Nuclear‐Cytosol Extraction Kit (Solarbio) according to the manufacturer's instructions. Western blot procedure was performed as previously described.33 Primary antibodies against the following proteins were used: myosin IIA (Abcam, ab138498, 1:1000), myosin IIB (Abcam, ab230823, 1:1000), p21 (CST, 2947, 1:1000), p53 (Proteintech, 10442‐1‐AP, 1:1000), Cyclin D1 (Abcam, ab134175, 1:10 000), CDK4 (Abcam, ab108357, 1:1000), MRTF‐A (Abcam, ab115319, 1:1000), RhoA (Abcam, ab187027,1:1000), p‐RhoA‐Ser188 (Abcam, ab41435, 1:1000), ROCK1 (Proteintech, 21850‐1‐AP, 1:1000), ROCK2 (Proteintech, 20248‐1‐AP, 1:1000), MLC (CST, 3671, 1:1000), p‐MLC‐Ser19 (CST, 3671, 1:1000), GAPDH (Affinity, AF7021, 1:2000), Lamin B (Proteintech, 12987‐1‐AP, 1:1000). GAPDH and Lamin B were used for normalization. The experiments were repeated three times.
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3

Immunofluorescence Analysis of Cytoskeletal Proteins

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Immunofluorescence analysis was performed as previously described.33 Briefly, 4% paraformaldehyde was used to fix attached human NP cells, then 0.2% Triton X‐100 in PBS was used to permeabilize. The slides were washed in PBS and blocked with 2% bovine serum albumin (BSA) in PBS for 2 hours at 37°C and then incubated with primary antibodies against: myosin IIA (Abcam, ab138498, 1:200), myosin IIB (Abcam, ab230823, 1:100), MRTF‐A (Abcam, ab115319, 1:200). After washed twice, the slides were subsequently treated with secondary goat anti‐rabbit antibody (Boster) at 37°C for 2 hours. Nuclei were co‐stained for 5 minutes with 0.1 g/mL DAPI (Beyotime, Nantong, China), and images were captured under a microscope (Olympus, BX53). To analyse the nuclear‐to‐cytoplasmic fluorescent intensity ratio of MRTF, the nuclear intensity and cytoplasmic intensity of 20 cells from each group were calculated and analysed by Image J (NIH). For co‐localization analysis of myosin II isoforms with F‐actin, the Pearson coefficient was calculated by Image J (NIH) and the Coloc 2 plugin.
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