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9 protocols using coenzyme q2

1

Coenzyme Q Metabolism and Amyloid-beta

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Coenzyme Q2 and Q6 were purchased from Sigma Aldrich (#C8081, #C9504). Coenzyme Q9 was purchased from Cayman Chemical (#16866). Coenzyme Q10 was generously provided by Kaneka Corporation. Human Aβ25–35 (#AS-24227) and Human Aβ25–35 HiLyte™ Fluor 488-labeled (#AS-63308) were obtained from Anaspec. The fluorescent probes, Fluo-4 AM (#F23917), H2DCF-DA (#C6827), MitoSOX (#M36008), MitoTracker Red CMXRos (#M7512), Calcein-AM (#C34852), and Hoescht 33258 (#861405), were obtained from Thermo Fisher. Ethidium bromide (EtBr, #46067) was acquired from Sigma–Aldrich.
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2

NADH Dehydrogenase Activity Assay

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NADH dehydrogenase activity was measured in 1 mL NDH buffer (50 mm potassium phosphate buffer, pH 7.5, 1 mm EDTA, 0.2 mm KCN), containing 20–30 μg proteins from the mitochondrial lysates and 5 μL of 20 mm NADH (AppliChem). After the addition of 2 μL 10 mm coenzyme Q2 (Sigma-Aldrich), the change in absorbance at 340 nm was followed for 3 min (Čermáková et al., 2019 (link)). A unit of activity was defined as the amount of enzyme that catalyses the oxidation of 1 nmol NADH per min, assuming an extinction coefficient of 6.2 L mmol−1 cm−1 (Gonzalez-Halphen and Maslov, 2004 (link)). Solutions of the inhibitors were freshly prepared. Capsaicin (Sigma-Aldrich) was dissolved in ethanol, rotenone (Serva, Heidelberg, Germany) and DPI (diphenyl iodonium, Sigma-Aldrich) – in dimethylsulphoxide and methanol, respectively. Rotenone and DPI were added to the assay mixture immediately before the start of the reaction, Capsaicin was pre-incubated for 3 min. Native electrophoresis and in-gel activity staining methods were adapted from Zerbetto et al. (1997 (link)) and Wittig et al. (2007 (link)) and performed as described previously (Verner et al., 2014 (link)).
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3

Hepatoprotective Mechanisms of Natural Compounds

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Aspirin, LPS, NAC, NADPH, reduced glutathione (GSH), 1-chloro 2,4-dinitrobenzene (CDNB), cumene hydroperoxide, glutathione reductase, 5,5’-dithio bis-2-nitrobenzoic acid (DTNB), cytochrome c, coenzyme Q2, antimycin A, dodecyl maltoside, N-nitrosodimethylamine (NDMA), erythromycin and ATP bioluminescent somatic cell assay kits were purchased from Sigma (St Louis, MO, USA). 2,7-Dichlorofluorescein diacetate (DCFDA) was purchased from Molecular Probes, Inc. (Eugene, OR, USA). Kits for mitochondrial membrane potential assays were procured from R & D Systems, MN, USA. Apoptosis detection kits for flow cytometry and IL6 and TNF-α measurement kits were purchased from BD Pharmingen (BD Biosciences, San Jose, USA). HepG2 cells were purchased from American Type Culture Collection (Manassas, VA, USA). Polyclonal antibodies against beta-actin, HO-1, IκB-α, NF-κBp65, PARP, Nrf-2 and cytochrome c were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA, USA). Reagents for electrophoresis and Western blot analyses were purchased from Bio-Rad Laboratories (Richmond, CA, USA).
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4

Streptozotocin-Induced Diabetes Assay

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Streptozotocin (STZ), reduced and oxidized glutathione (GSH/GSSG), 1-chloro 2,4-dinitrobenzene (CDNB), cumene hydroperoxide, glutathione reductase, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), NADH, NADPH, cytochrome c, coenzyme Q2, sodium succinate, antimycin A, dodecyl maltoside, resorufin, 7-ethoxyresorufin, methoxyresorufin, Hoechst 33342, and ATP bioluminescent somatic cell assay kits were purchased from Sigma-Aldrich (St. Louis, MO, USA). 2′,7′-Dichlorofluorescein diacetate (DCFDA) was procured from molecular probes (Eugene, OR, USA). Kits for nitric oxide and caspase-3 and caspase-9 assays were purchased from R&D Systems Inc., MN, USA, and that for lipid peroxidation (LPO) from Oxis International Inc. (CA, USA). Kits for GSH/GSSG assay were procured from Promega Corp. (Madison, WI, USA). Apoptosis detection kits for flow cytometry were purchased from BD Pharmingen (BD Biosciences, San Jose, USA). Rin-5F cells were obtained from American Type Culture Collection (Manassas, VA, USA). Polyclonal antibodies against beta-actin, caspase-3, PARP, NOS-2, Nrf2, GLUT 2, Bax, Bcl-2, Akt, and p-Akt were purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Reagents for cell culture, SDS-PAGE, and Western blot analyses were purchased from Gibco BRL (Grand Island, NY, USA) and Bio-Rad Laboratories (Richmond, CA, USA).
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5

Antioxidant Enzyme Assays Protocol

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Aspirin (acetylsalicylic acid, ASA), reduced glutathione (GSH), oxidized glutathione (GSSG), 5,5′-dithio-bis (2-nitrobenzoic acid), 1-chloro 2,4-dinitrobenzene (CDNB), cumene hydroperoxide, dimethyl nitrosamine (DMNA), erythromycin, glutathione reductase, NADH, NADPH, coenzyme Q2, antimycin A, dodecyl maltoside, sodium succinate, cytochrome c, lucigenin and ATP Bioluminescent cell assay kits were purchased from Sigma-Aldrich Fine Chemicals (St. Louis, MO, USA). 2′,7′-dichlorofluorescein diacetate (DCFDA) was procured from Molecular Probes (Eugene, OR, USA). Kits for SOD and GDH were procured from Abcam (Cambridge, UK), and lipid peroxidation (LPO) kits were obtained from Oxis Int. Inc. (Portland, OR, USA).
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6

Hepatic Oxidative Stress Pathway Evaluation

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Cytochrome c, reduced glutathione (GSH), oxidized glutathione (GSSG), 5,5′‐dithio‐bis(2‐nitrobenzoic acid), cumene hydroperoxide, dimethylnitrosamine (DMNA), erythromycin, 7‐ethoxyresorufin, methoxyresorufin, resorufin, dinitrophenylhydrazine (DNPH), lucigenin, glutathione reductase, thiobarbituric acid, NADH, NADPH, coenzyme Q2, sodium succinate, antimycin A, rotenone, dodecyl maltoside, ATP Bioluminescent cell assay kits, and Hexokinase assay kits were purchased from Sigma‐Aldrich Fine Chemicals (St Louis, MO). 2′, 7′‐Dichlorofluorescein diacetate (DCFDA) was procured from Molecular Probes (Eugene, OR). Kits for SOD assay were procured from R & D Systems (Minneapolis, MN) and for glutamate dehydrogenase assay from Abcam (Cambridge, UK).Polyclonal antibodies against CYP2E1, Glut 2, NF‐kB p65, and β‐actin were purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA), whereas those against PPAR‐γ and HO‐1 were purchased from Abcam. Reagents for SDS‐PAGE and Western blot analyses were purchased from Gibco BRL (Grand Island, NY) and Bio Rad Laboratories (Richmond, CA).
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7

Comprehensive Collection of Lipid Standards

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Balsam of Peru (W211613), balsam of Peru oil (W211710), benzyl cinnamate (234214), benzyl benzoate (B9550), geranylgeraniol (G3278), farnesol (277541), geranylgeranyl acetone (G5048), geraniol (163333), squalene (S3626), geranyl acetone (250716), vitamin K1 (V3501), vitamin K2 (V9378), vitamin A (R7632), vitamin E (T3251), vitamin D3 (C9756), coenzyme Q2 (C8081), coenzyme Q0 (D9150), coenzyme Q4 (C2470), coenzyme Q6 (C9504), coenzyme Q10 (C9538), palmitoleic acid (P9417), methyl palmitoleate (P9667), cis-11-hexadecenal (249084), palmityl acetate (P0260), palmitoleyl alcohol (P1547), lauryl palmitoleate (P1642), oleamide (O2136), palmitoyl ethanolamide (P0359), tetradecanoic acid ethylamide (R425567), N-oleoyl glycin (O9762), N,N-dimethyl tetradecanamide (S347388), and 1-dodecyl-2-pyrrolidinone (335673) were obtained from Sigma-Aldrich (St. Louis, MO). Coenzyme Q1 (270–294-M002) was obtained from Alexis Biochemicals.
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8

Mitochondrial Oxidative Stress Assays

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Reagents were obtained from the following sources: RPMI-1640 medium, Hank’s balanced salt solution (HBSS), 0.25% Trypsin-EDTA, heat-inactivated horse serum, fetal bovine serum (FBS), G418 supplement, Lipofectamine 2000, Mito Tracker Red, Mito Tracker Green, tetramethylrhodamine methyl ester (TMRM) from Invitrogen Co. (Grand Island, NY); Bicinchoninic Acid (BCA) protein assay from Pierce Chemical Company (Rockford, IL); CellTiter 96 Non-Radioactive Cell Proliferation Assay from Promega Co. (Madison, WI); Lentiviral Packaging Mix, Tert-Butyl hydroperoxide (TBH), Coenzyme Q1, Coenzyme Q2 from Sigma-Aldrich Co. (St. Louis, MO); Hydrogen peroxide (H2O2), Super Signal West Pico Chemiluminescent Substrate from Thermo Fisher Scientific Co. (Waltham, MA); ATP Bioluminescence Assay Kit HS II, In Situ Cell Death Detection Kit, Fluorescein from Roche Applied Science Co. (Indianapolis, IN); Signal transduction antibodies from Cell Signaling Technology Co. (Danvers, MA). All other chemicals used were of the highest purity commercially available.
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9

Oxidative Stress and Inflammatory Response

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Aspirin, LPS, NAC, malondialdehyde, NADPH, 2-thiobarbituric acid, reduced glutathione (GSH), 1-chloro 2,4-dinitrobenzene (CDNB), cumene hydroperoxide, glutathione reductase, 5,5′-dithio bis-2-nitrobenzoic acid (DTNB), cytochrome c, coenzyme Q2, antimycin A, dodecyl maltoside, N-nitrosodimethylamine (NDMA), erythromycin, 7-ethoxyresorufin, resorufin and ATP bioluminescent somatic cell assay kits were purchased from Sigma (St Louis, MO, USA). 2,7-Dichlorofluorescein diacetate (DCFDA) was purchased from Molecular Probes, Inc. (Eugene, OR, USA). Kits for mitochondrial membrane potential assays were procured from R & D Systems, MN, USA. Apoptosis detection kits for flow cytometry and IL6 and TNF-α measurement kits were purchased from BD Pharmingen (BD Biosciences, San Jose, USA). Murine macrophage J774.2 cells, which are circulatory monocyte macrophages from tumor bearing mice, were purchased from European Collection of cell cultures (Health Protection Agency Culture Collections, Salisbury, UK). Polyclonal antibodies against beta-actin, HO-1, TNF-α, Nrf-2, IκB-α, cytochrome c, and Bcl-2 and, NF-κBp65 were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA, USA). Reagents for electrophoresis and Western blot analyses were purchased from Bio-Rad Laboratories (Richmond, CA, USA).
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