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Fast sybr green pcr kit

Manufactured by Thermo Fisher Scientific
Sourced in United States, Japan, China

The Fast SYBR Green PCR kit is a reagent kit designed for fast and sensitive real-time PCR (polymerase chain reaction) analysis. It contains all the necessary components, including SYBR Green I dye, for conducting real-time PCR amplification and detection.

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91 protocols using fast sybr green pcr kit

1

Isolation and Quantification of miRNA and mRNA

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miRNA was isolated from EVs, tissues, and cells using the mirVanaTM PARISTM RNA kit (AM1556, Invitrogen). For mRNA analysis, First Strand cDNA Synthesis Kit (K1622, Fermentas Inc., Hanover, MD) was used to randomly synthesize cDNA from 1 μg of total RNA. For miRNA analysis, TaqMan microRNA Reverse Transcription Kit (4366597, Applied Biosystems Inc. Carlsbad, CA) was used to synthesize cDNA of miRNA. Next, RNA was quantitatively analyzed using Fast SYBR Green PCR kit (Applied Biosystems) and ABI PRISM 7300 RT-PCR system (Applied Biosystems), with three repeated wells for each sample. U6 served as the internal reference for miR-138-5p, while GAPDH for the remaining genes. All primers were purchased from Sangon Biotechnology (Shanghai, China), and the sequences are shown in Supplementary Table 1. Besides, reverse primers of TaqManTM microRNA Reverse Transcription Kit were used.
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2

Transcriptomic Analysis of miRNA and mRNA

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Total RNA from tissues was collected using a TRIzol kit (15596026, Invitrogen, Inc., Carlsbad, CA, USA) and reversely transcribed into cDNA using a PrimeScript RT reagent Kit (RR047A, Takara, Holdings Inc., Kyoto, Japan). The cDNA was amplified for qPCR using a Fast SYBR Green PCR Kit (Applied Biosystems, Inc., Carlsbad, CA, USA) on an ABI PRISM 7300 System (Applied biosystems). The primers are shown in Table 1 with U6 as an internal reference for miR-29a and miR-199B while GAPDH for mRNAs. Relative gene expression was determined by the 2-△△Ct method.

Primer sequences for RT-qPCR

GenePrimer sequence (5′-3′)
miR-29aF: GCGCACTGATTTCTTTTGGTGTTCAG
R: GCGAGCACAGAATTAATACGAC
miR-199BF: TTATCCTAATTGCTCCTACGGCT
R: ATTCGGCATCGCGCTAAACGTTA
RGMAF: TCACCGACCGCTTCCAGACC
R: CTCCTTCACCAGTTACGACACCTC
GAPDHF: GGGAGCCAAAAGGGTCAT
R: GAGTCCTTCCACGATACCAA
U6F: CGAACGATACAGAGAAGATTAGC
R: CGAACGATACAGAGAAGATTAGC

RT-qPCR reverse transcription-quantitative polymerase chain reaction, miR microRNA, RGMA repulsive guidance molecule A, GAPDH glyceraldehyde-3-phosphate dehydrogenase, F forward, R reverse

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3

Quantification of HOTAIR and HOXA5 Expression

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Total RNA was extracted using the Trizol kit (15596026, Invitrogen Inc., Car, Cal, USA). Based on the instructions of Primescript RT reagent kit (RR047A, TaKaRa, Tokyo, Japan), RNA was reversely transcribed into complementary DNA (cDNA). RT-qPCR was then carried out using the Fast SYBR Green PCR Kit (Applied Biosystems, Carlsbad, CA, USA) on the ABI PRISM 7300 RT-PCR System (Applied Biosystems, Carlsbad, CA, USA). The reaction conditions were as follows: pre-denaturation at 95 °C for 5 min, 40 cycles of denaturation at 95 °C for 30 s, annealing, and extension at 60 °C for 1 min. Each sample was set with 3 duplicated wells. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene served as an internal reference. The relative expression of HOTAIR and HOXA5 between the experiment group and the control group was calculated based on the 2−∆∆Ct method. The primers sequences are shown in Table 1.

Primer sequence for RT-qPCR

GenesPrimer sequence
HOTAIRF: 5′-CAGTGGGGAACTCTGACTCG-3′
R: 5′-GTGCCTGGTGCTCTCTTACC-3′
HOXA5F: 5′-CGCCCAACCCCAGATCTA-3′
R: 5′-GGCCGCCTATGTTGTCATG-3′
GAPDHF: 5′-GCCAAGGTCATCCATGACAACT-3′
R: 5′-GAGGGGCCATCCACAGTCTT-3′

RT-qPCR reverse transcription quantitative polymerase chain reaction, HOTAIR Hox transcript antisense intergenic RNA, HOXA5 homeobox A5, GAPDH glyceraldehyde-3-phosphate dehydrogenase, F forward, R reverse

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4

Quantitative Analysis of miRNA and mRNA

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Total RNA was extracted using Trizol reagent (15596026, Invitrogen). MiRcute miRNA First-strand cDNA synthesis kit (Tiangen Biotech, Beijing, China) was used for RT of miRNA, and Primer-ScriptTM one step RT-PCR kit (Takara, Shiga, Japan) for RT of mRNA. The synthesized cDNA was subjected to RT-qPCR detection using Fast SYBR Green PCR kit (Applied Biosystems, Foster City, CA, United States) and 7500 Fast Real-Time PCR System (Applied Biosystems). The relative expression of genes was analyzed using the 2–ΔΔCt method. The primer design is shown in Table 1.
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5

Comprehensive RNA Extraction and RT-qPCR Analysis

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Total RNA was extracted using Trizol (15,596,026, Invitrogen). Next, total RNA was reversely transcribed into cDNA according to the instructions of PrimeScript RT reagent Kit (RR047A, Takara Bio Inc., Otsu, Shiga, Japan). The RNA was reversely-transcribed into cDNA for miRNA detection using miRNA First Strand cDNA Synthesis (Tailing Reaction) kit (B532451-0020, Shanghai Sangon Biotechnology Co., Ltd., Shanghai, China). The reverse transcription quantitative polymerase chain reaction (RT-qPCR) was conducted for synthetized cDNA using Fast SYBR Green PCR kit (Applied Biosystems, Carlsbad, CA) and ABI7500 qPCR instrument (ABI Company, Oyster Bay, NY). GAPDH and U6 were regarded as the internal reference to quantify relative expression using the 2−ΔΔCt method (Additional file 1: Table S1).
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6

Comprehensive miRNA and mRNA Analysis

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According to the manufacturer's instructions, miRNA was isolated from EVs, tissues, and cells by using the mirVanaTM PARISTM RNA kit (AM1556, Invitrogen, CA, USA). For mRNA analysis, cDNA was synthesized randomly from 1 μg of total RNA using the First Strand cDNA Synthesis Kit (K1622, Fermentas, USA) was used to synthesize cDNA randomly from 1 μg of total RNA; for miRNA analysis, the TaqManTM MicroRNA Reverse Transcription Kit (4366597, Applied Biosystems, USA) was used to synthesize cDNA for miRNA. Finally, the Fast SYBR Green PCR kit (Applied biosystems) and the ABI PRISM 7300 RT-PCR system (Applied biosystems) were used to analyze RNA quantitatively, and each sample was repeated for three replicate wells. miR-30c was used with U6 as the internal reference, and the remaining genes were used with GAPDH. The relative gene expression was analyzed by the 2-ΔΔCt method, calculated as △Ct=CT (target gene)−CT (internal reference) and △△Ct=△Ct (Experimental group)−△Ct (control group), repeated the experiment 3 times, and took the average value. All primers were purchased from Sangon Biotech (Shanghai) Co., Ltd. and the primer sequences were as follows Table 1.
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7

Quantifying miRNA and mRNA Levels

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Isolation of total RNA from the cells was performed using Trizol (15596026, Invitrogen) and was reversely transcribed into complementary DNA (cDNA) using PrimeScript RT reagent kit (RR047A) or NCode miRNA First‐Strand cDNA Synthesis Kit (Thermo Fisher Scientific Inc). The synthesized cDNA was used to perform RT‐qPCR reactions using Fast SYBR Green PCR Kit (Applied Biosystems) on ABI PRISM 7300 RT‐PCR System (Applied Biosystems). The U6 gene was used as an endogenous control gene for normalizing the expression of miR‐224, whereas glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) was taken as the internal reference of other genes. The fold changes between the experiment group and the control group were calculated by means of relative quantification (2−ΔΔCt method). Primer sequences are shown in Table 1.14, 15
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8

Quantification of miRNA and mRNA Transcripts

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Using Trizol reagents (15596026, Invitrogen) to extract the total RNA, using the PrimeScript RT regent Kit (RR047A, Takara) instruction to reverse transcribe the RNA complementary DNA (cDNA), using the FastSyBR Green PCR kit (Applied Biosystems) to prepare the reaction system for the synthesized cDNA, the abiprism7300 RT-PCR system (Applied biosystems) was performed for quantitative real time-polymerase chain reaction detection. Three repeats per sample. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) as an internal reference. MiRNA expression was detected using PrimeScript miRNA RT_PCR kit (Takara Biotechnology co, ltd) with u6 as within the miRNA. The primers were as follows: NRST, F5′-CTTTGTCCTTATCTCAAGTTCTCG-3′, R5′-ACCTGTCTTGGCATGGGGGTTA-3′; EGFR, F5′-GGGATGAGTCAGTCAG-3′, R5′-TGGTT CATATTGTCGTCAGGT-3′; GAPDH, F5′TGCACACACTACTTAG-3′, R5′-GGACTGTGTGTGTG-3′; and miRNA-9, F5′-TCCTTTGGATCTCTCTCGCT-3’.
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9

Quantifying Gene Expression by RT-qPCR

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The TRIzol reagents (Invitrogen, Carlsbad, CA, USA) were utilized in order to get the total RNA. cDNA was produced from the isolated RNA by employing the PrimeScript RT Reagent Kit (Takara, Japan) in the process of reverse transcription. Next, synthesized cDNA was subjected to RT-qPCR using the Fast SYBR Green PCR Kit (Applied Biosystems, Foster City, CA, USA) on an ABI PRISM 7300 instrument (Applied Biosystems). 2ΔΔCt method was utilized in order to calculate the fold changes in target genes. The primer sequences were presented as follows: CCDC137 5′-ACGGGGCCTATATCCACCG-3′ (forward) and 5′-CGTCGGACTTTATCTAGTCGCC-3′ (reverse); GAPDH 5′-GGAGCGAGATCCCTCCAAAAT-3′ and 5′-GGCTGTTGTCATACTTCTCATGG-3′.
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10

Quantitative Analysis of miR-497 and MUC1 Expression

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Total RNA was extracted using Trizol reagent (15596026, Invitrogen) and RT was performed using the NCodeTM miRNA First-Strand complementary DNA (cDNA) Synthesis Kit (Thermo Fisher Scientific Inc., Waltham, MA, United States). The synthesized cDNA was subjected to reverse transcription-quantitative polymerase chain reaction (RT-qPCR) detection using a Fast SYBR Green PCR Kit (Applied Biosystems, Carlsbad, CA, United States) in an ABI PRISM 7300 RT-qPCR System instrument (Applied Biosystems). Each reaction was conducted in triplicate. The relative expression of miR-497 (normalized to U6) and MUC1 [normalized to glyceraldehyde-3-phosphate dehydrogenase (GAPDH)] was calculated using the 2–ΔΔCT method. Primers are shown in Table 1.
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