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5 protocols using anti p p65

1

Immunohistochemical Analysis of Inflammation in IVD

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Rat and human IVD tissues were obtained, fixed with 4% PFA for 48 h and then decalcified and embedded in paraffin. The tissues were cut into 5-μm-thick sections that were successively dewaxed and hydrated with xylene, anhydrous ethanol and an alcohol gradient (95%, 85% and 75%). The sections were then subjected to antigen retrieval with pepsin for 20 min at 37°C, incubated with neutralized endogenous peroxidase in a humidified box for 15‒20 min and sealed with goat serum for 30 min. The slides were then incubated overnight at 4°C with primary antibodies including anti-p-p65 (1:100; ABclonal), anti-HMGB1 (1:100; ABclonal), anti-NLRP3 (1:1000; Cell Signaling Technology), anti-caspase-1/p20 (1:100; Affinity), and anti-p21 (1:100; Santa Cruz Biotech, Santa Cruz, USA). The sections were subsequently rewarmed and incubated with biotin-labeled goat anti-mouse/rabbit secondary antibodies for 20‒30 min at room temperature and HRP-conjugated streptavidin (ZSGB-BIO, Beijing, China) for 25 min. DAB (ZSGB-BIO) staining and hematoxylin staining were performed for 1 min. Finally, images were captured using an Eclipse 80i fluorescence microscope (Nikon, Tyoko, Japan).
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2

Immunohistochemical Analysis of Caveolins and Inflammatory Markers

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All the sections were blocked with 10% donkey serum with 0.3% Triton X-100 and 1% BSA for 2 h and incubated with anti-Cav1 (1:400, Cell Signaling Technology, MA, USA), anti-p-p65 (1:200, ABclonal, MA, USA), anti-COX-2 (1:200, HuaBio, Zhejiang, China), anti-Collagen I (1:200, Abcam, Cambridge, UK) and anti-IgG (1:400, Cell Signaling Technology, MA, USA) antibodies at 4 °C overnight, followed by incubation with secondary antibody (HRP conjugated goat anti-Rabbit IgG, 1:500, Beyotime, Shanghai, China) for 2 h. Sections were visualized with DAB (Sangon Biotech, Shanghai, China) for 30 min and counterstained with hematoxylin. Evaluation of the immunocytochemistry was done by light microscopy.
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3

Protein Extraction and Western Blot Analysis

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Total protein was extracted by lysing cells in lysis buffer (20 mM HEPES, pH 7.4, 20 mM NaCl, 10% glycerol, and 1% Triton X-100). Colonic membrane proteins were prepared using a Membrane Protein Extraction Kit (Biovision, Milpitas, CA, USA) and soluble proteins were isolated from colon homogenates using methanol and chloroform (28 (link)). All protein samples were subjected to 12% SDS-polyacrylamide gel electrophoresis and transferred to PVDF membranes (Millipore, Merck KGaA, Darmstadt, Germany). Immunoblotting was performed with the following primary antibodies: anti-tmTNF-α (home-made) (31 (link)), anti-TNF-α (Cat# 3707s), anti-PARP (Cat# 9532s), anti-cleaved caspase 3 (Asp175) (Cat# 9661s) from Cell Signaling Technology (Danvers, MA, USA), anti-IκB-α (Santa Cruz, CA, USA, Cat# sc-1643), anti-p65 (Cat# A19653), anti-p-p65 (Cat# AP0475), anti-caspase 3 (Cat# A17900), anti-Na+/K+ ATPase (Cat# A12405), and anti-β-actin (Cat# AC026) from Abclonal (Wuhan, China). HRP-conjugated secondary antibodies (Cell Signaling Technology, Danvers, MA, USA, Cat# 7074) were subsequently applied to the membrane. Bands were visualized using an enhanced chemiluminescence system (ECL; TIANGEN, Beijing, China).
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Protein Expression Analysis in Stimulated NP Cells

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Stimulated NP cells were collected and then lysed with RIPA lysis buffer (CWBIO, Beijing, China) for total protein, or with an extraction kit for cytoplasmic and nuclear protein (CWBIO). After being centrifuged and collected, the supernatant containing proteins was then quantified using a BCA assay kit (CWBIO). Afterwards, the proteins were separated by SDS-PAGE and electro-transferred to polyvinylidene difluoride membranes (Millipore, Darmstadt, Germany). After being blocked with 5% bovine serum albumin in TBST for 1 h, the membranes were then incubated at 4°C overnight with anti-CBX4 (1:1000; Abcam), anti-MMP3 (1:1000; Abcam), anti-MMP13 (1:1000; Abcam), anti-ADAMTS5 (1:1000; Abcam), anti-COX2 (1:1000; Abcam), anti-COL2A1 (1:1000; Abcam), anti-P53 (1:1000; Abcam), anti-P21 (1:1000; Abcam), anti-β-actin (1:1000; Abclonal, Wuhan, China), anti-p-p65 (1:1000; Abclonal), anti-p65 (1:1000; Abclonal), or anti-Histone H3 (1:1000; CST, Danvers, USA) antibodies. Afterwards, the membranes were incubated with the corresponding HRP-conjugated secondary antibodies (1:8000; Abclonal). The protein bands were visualized using an Enhanced Chemiluminescence kit (Vazyme, Nanjing, China) and then quantified by Image J (National Institutes of Health, Bethesda, USA).
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5

Immunofluorescence Analysis of RAW264.7 Macrophages

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RAW264.7 macrophages were seeded in 24-well culture plates, and cell climbing sections were placed inside the culture plates for immunofluorescence detection. Immunofluorescence staining was performed using anti-iNOS (1:200; ProteinTech), anti-Arg-1 (1:200; ProteinTech), anti-KOR (1:200; Abclonal) and anti-P-P65 (1:200; ABclonal) antibodies diluted in 1% BSA. After primary antibody incubation overnight at 4°C, the primary antibody was aspirated and rinsed with PBS solution for 15 min. The fluorescent secondary antibody (AlexaFluor® 488; Abcam) diluted in 1% BSA was used to incubate with the samples for 2 h at room temperature. After the samples were rinsed with PBS for 15 min, images were observed and photographed with a confocal microscope (Zeiss, Wetzlar, Germany), and fluorescence intensity was determined with ImageJ software.
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