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5 protocols using fd8030

1

Comprehensive Protein Expression Analysis in Colorectal Cancer

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The primary antibodies used were anti-HuR antibody (11910-1-AP, Proteintech), anti-PTBP1 antibody (12582-1-AP, Proteintech), anti-RHOBTB3 antibody (13945-1-AP, Proteintech), anti-E-cadherin antibody (3195, Cell Signaling Technology), anti-N-cadherin antibody (sc-8424, Santa Cruz), anti-CD44 antibody (15675-1-AP, Proteintech), anti-MMP2 antibody (ab92536, Abcam), anti-ADAR3 antibody (sc-73410, Santa Cruz), anti-PKM1 antibody (7067, Cell Signaling Technology), anti-PKM2 antibody (4053, Cell Signaling Technology), and anti-β-actin antibody (3700, Cell Signaling Technology). CRC cells were collected, washed and lysed in RIPA lysis buffer (Beyotime, Hangzhou, China). Then, the protein concentration was determined using a BCA Protein Assay Kit (Beyotime). Cell lysates were separated by 8-12% SDS-PAGE and then transfected into PVDF membranes (Millipore, Schwalbach, Germany). The membrane was blocked with TBST buffer containing 5% skim milk powder and incubated with the corresponding primary antibodies at 4 °C overnight. The membrane was hybridized with an HRP-conjugated secondary antibody (FDM007 and FDR007, Fudebio, Hangzhou, China) at room temperature for 1 h. The signals were detected using an enhanced chemiluminescence kit (FD8030, Fudebio, Hangzhou, China).
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2

Exosomal Protein Analysis by Western Blot

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As previously described [19 (link)], the total proteins were extracted from the purified exosomes. After the proteins were denatured, they were electrophoresed on sodium dodecyl sulfate–polyacrylamide gel electrophoresis SDS-PAGE gel (FD341-100, Fudebio, Hangzhou, China) and transferred onto equilibrated polyvinylidene difluoride membranes. The membranes were then blocked for 1 h at room temperature and incubated with primary antibodies overnight at 4 °C. Before being detected by an enhanced chemiluminescence (ECL) system (Biotanon, Shanghai, China) with FDbio-FemtoECL (FD8030, Fudebio, Hangzhou, China), the membranes were incubated with a secondary anti-rabbit immunoglobulin G (IgG) horseradish peroxidase (HRP)-linked antibody. The antibodies are listed in Supplementary Material S1 Table S4.
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3

Western Blot Analysis of EMT Markers

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NPC cells were lysed in RIPA lysis buffer (Meilun Biotechnology Co., Ltd., Dalian, China) containing protease inhibitor cocktails (Fudebio, Hangzhou, China). Then, total protein from different samples (30 μg/per lane) was separated by SDS-PAGE and transferred onto 0.22 μM PVDF membranes (Amersham Bioscience, Piscataway, NJ, United States). After that, the membranes were blocked with 5% skimmed milk in TBST for 1 h and incubated with specific primary antibody overnight at 4°C. After being washed with TBST, the membranes were incubated with the secondary antibody for 1 h at room temperature. Next, the protein bands were developed using an enhanced chemiluminescence kit (FD8030, Fudebio, Hangzhou, China). Antibodies were listed: anti-E-cadherin (Abcam, ab76319, 1:2,000), anti-Vimentin (Abcam, ab92547, 1:2,000), anti-PIK3R1 (Abcam, ab191606, 1:1,000), anti-ERBB2 (Abcam, ab237715, 1:1,000), anti-GAPDH (Abcam, ab8245, 1:3,000), goat anti-mouse IgG H&L (HRP) (Abcam, ab205719, 1:5000), and goat anti-rabbit IgG H&L (HRP) (Abcam, ab205718, 1:5,000).
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Western Blot Analysis of Protein Targets

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Proteins were extracted using RIPA buffer (Beyotime, Shanghai, China), and the concentration was determined by a BCA kit (ThermoFisher Scientific). An equivalent amount of proteins was isolated by SDS-PAGE, and transferred to polyvinyl fluoride membrane (Merck KGaA). After incubation with primary antibodies overnight at 4°C, and incubation with horseradish peroxidase-conjugated secondary antibodies (FDM007 and FDR007, Fudebio, Hangzhou, China) for 2 h. The membranes were treated with the enhanced chemiluminescent reagents (MILLIPORE, WBKLS0500). The signals were examined by ChemiDox (bio-rad, USA) with the treatment of an enhanced chemiluminescence kit (FD8030, Fudebio, Hangzhou, China). The primary antibodies involved in the present study were GAPDH (1:1000, Abcam), anti-S1PR2 (1:500, Proteintech), anti-AKT (1:1000, Wanleibio), anti-p-AKT (Ser473) (1:1000, Wanleibio).
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5

Protein Expression Analysis by Western Blot

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Cells were lysed in RIPA Lysis Buffer (MA0151, Dalian Meilun Biotechnology Co., Ltd., China) containing a protease inhibitor cocktails (FD1001, Fudebio, Hangzhou, China) on ice. Equal amounts of total protein from different samples were separated by SDS-PAGE gels at 100 V for 1.5 h and transferred onto 0.22 μm polyvinylidene difluoride (PVDF) membranes (Amersham Bioscience, Piscataway, NJ) at 280 mA for 1.5 h. Then, the membranes were blocked with 5% skim milk powder in TBST for 1 h at room temperature and treated with specific primary antibodies overnight at 4 °C. The next day, the membranes were washed with TBST and incubated with an HRP-conjugated secondary antibody (FDM007 and FDR007, Fudebio, Hangzhou, China). Each band was detected using an enhanced chemiluminescence kit (FD8030, Fudebio, Hangzhou, China). Anti-GAPDH, anti-CREB3, anti-Bcl-2, anti-mmp2, anti-Vimentin and anti-E-cadherin antibodies were purchased from Abcam (Cambridge, UK). The anti-c-Jun, anti-cleaved-caspase 3 antibodies were purchased from Cell Signaling Technology (Boston, MA, USA); anti-mmp9 antibody was purchased from ABclonal (Boston, MA, USA); and anti-N-cadherin antibody was purchased from Proteintech (Chicago, USA). Primary Antibody Dilution Buffer was purchased from Dalian Meilun Biotechnology Co., Ltd. (MB9881, Dalian, China).
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