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101 protocols using nec 1

1

Mechanobiology of Nucleus Pulposus Cells

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The model system was used as previously described, in which 1.0 MPa compression was loaded on NP cells to imitate in vivo condition [15 (link), 16 (link)]. The cells were treated with DMSO (Control, Sigma, USA), necroptosis inhibitor Necronstatin-1 (Nec-1, Sigma, USA), autophagy inhibitor 3-Methyladenine (3-MA, Sigma, USA), and apoptosis inhibitor Z-VAD-FMK (Z-VAD, Merck, Germany) and then using a combination of the inhibitors: Nec-1+3-MA and Nec-1+Z-VAD. The bottom of the pressure vessel was filled with distilled water to preserve sufficient humidity and keep the device in an incubator at 37°C. 0 h mentioned in the experiment means the beginning of compression. The 0, 24, and 36 h compression-treated time points were selected in the current experiment according to our previous studies [15 (link), 16 (link)].
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2

Hemorrhage/Trauma-Induced MODS Study

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The experimental rats were randomly divided into three groups: (1) the sham group underwent the same anesthetic and surgical procedures and fluid resuscitation without induction of hemorrhage/trauma (n = 25); (2) the MODS group was described above (n = 25); and (3) the Nec-1 treatment group (n = 25), and the Nec-1 was purchased by Sigma, MO, USA, in which the MODS rats were pretreatment and once daily with Nec-1 (250 μg), which was diluted in resuscitation fluid and administered through the right jugular vein for about 20 minutes at a constant rate via a mini-pump. The dose of Nec-1 used in this study was based on previous study [11 (link)].
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3

Investigating Cell Death Pathways

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The following reagents were used: zVAD-FMK (10 μM, Apex Bio), QVD (10 μM, Apex Bio), SM-164 (100 nM, gift from Shaomeng Wang), GSK’963 (referred as RIPK1i, 100 nM, GlaxoSmithKline), Nec-1 (10 μM Merck), Nec-1s (10 μM Merck), RO-3306 (9 μM, Merck), Thymidine (Sigma), BIM peptide (Kind gift of Tony Letai), FLAG-hTNF (10 ng/ml, Enzo), MG132 (1-20 μM, as indicated per cell line, see below, SIGMA), Recombinant Casp8 (1U Enzo). The following antibodies were used for western blotting: α-RIPK1 (1:1000, BD Biosciences), α-HA (1:1000, Roche), α-PLK1 (1:1000, Bethyl Laboratories), α-PLK1-pT210 (1:2000, AbCam), α-Cyclin B (1:1000, Cell Signaling), α-BUBR1 (1:1000, BD Bioscience), α-BUBR1-pT680 (1:1000, Kind gift of Geert J.P.L Kops), α-BUBR1-pT676 (1:1000, Kind gift of Erich A. Nigg), α-pH-H3 (1:2000, Millipore), α-Casp8 (for WB - post IP, 1:5000, MBL), α-Casp8 - for IP (7.5 μg/ml, C-20, Santa Cruz Biotechnology, α-FADD – for IP (7.5 μg/ml, Santa Cruz), α-FADD (1:1000 BD Biosciences), α-RIPK3 (1:1000 Proscience), α-RIPK3 (1:1000 Novus Biological) α-cFLIP (1:1000, Enzo), α-Myc (1:1000, clone 9E10,SIGMA), α-HSP90 (1:1000 Santa Cruz Biotechnology).
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4

Intracerebroventricular Administration of Nec-1

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Nec-1 (25 mg, Sigma-Aldrich) was dissolved in dimethyl sulfoxide (DMSO, Sigma-Aldrich) to a final concentration of 40 µg/µL. Intracerebroventricular administration was performed as described previously.20 (link) A single dose of Nec-1 (5 µL) was administered using a 10 µL syringe 30 min after the surgery. The detailed process was similar to that described by others (coordinates: 1.0 mm posterior, 1.8 mm lateral to bregma, 4 mm depth).21 (link) The sham and vehicle group received an equal volume of DMSO in the same way.
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5

Nec-1 Protects Against IVH-Induced Injury

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Nec-1 (Selleck; Houston, TX, USA) was diluted with dimethyl sulfoxide (Sigma) to a concentration of 2.6 μg/μL. For the IVH + Nec-1 group, 1 μL Nec-1 (2.6 μg) solution was administered into the single lateral ventricle (co-ordinates relative to the bregma: 0.5 mm anterior to the bregma, 1.5 mm lateral of the bregma, and 2.2 mm in depth) one hour prior to IVH induction. Animals that died were excluded from the study.
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6

Leishmania infantum Infection of Neutrophils

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Neutrophils were infected in vitro with L. infantum promastigotes stationary-phase at a ratio of 1:2 (neutrophil:parasites). For assays of cell death, mouse and human neutrophils were pretreated for 30 min with zVAD-fmk (100 µM) (R&D Systems, Minneapolis, MN, USA) or zIETD-fmk (100 µM) (R&D Systems, Minneapolis, MN, USA) to block caspase activation before infection. In some experiments, Nec-1 (50 µM), GSK’872 (3 µM), or NSA (10 µM), necroptosis inhibitors (all from Merck Millipore’s Calbiochem®, Darmstadt, Germany) were used. DMSO (vehicle) 0.4% (Cayman Chemical; Ann Arbor, MI, USA) was used as control. After 18 h, mouse infected neutrophils, or after 3 h, human infected neutrophils, were centrifuged, supernatants containing noninternalized promastigotes were collected, and medium was replaced by 250 µl Schneider insect medium (Sigma-Aldrich, St. Louis, MO, USA), supplemented with 20% inactive FBS, 2 mM l-glutamine, 100 U/ml penicillin, and 100 g/ml streptomycin. After that, infected neutrophils were cultured at 25°C for an additional 3 days and intracellular load of L. infantum was estimated by production of proliferating extracellular motile promastigotes in Schneider medium (43 (link)).
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7

RIPK1-Mediated Necroptosis Signaling

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Stimulated T cells were incubated in lysis buffer. For signaling complex analyses, cell lysates were pre-cleared with Protein G beads prior to immunoprecipitation with anti-RIPK1 antibody. Antibodies and reagents used for immunoprecipitation and immunoblotting studies included: anti-RIPK1, anti-Bim, anti-Bclx, (BD Biosciences), nec1, anti-Bcl2, β-actin (Merck chemicals), anti-RIPK3 (ProSci Incorporated), anti-ubiquitin, anti-Bax, anti-RIPK3 (Santa Cruz Biotechnology), anti-RIPK1, anti-A20 (Cell signaling Technology), QVD, ZVAD (Enzo Life Science).
Signaling studies in MEFs were performed as described19 (link). RIPK1 immunoprecipitations were performed using anti-RIPK1 (Cell Signaling) and Dynabeads M270 Epoxy (Invitrogen). K63-ubiquitin immunoprecipitations were performed using anti-K63 (Millipore) and Dynabead Protein A (Invitrogen). Studies of RIPK3 mutants in A20−/−Ripk3−/− MEFs were performed by generating RIPK3 lysine mutants, introducing mutant RIPK3-encoding cDNAs into GFP expressing lentiviral constructs, and infecting A20−/−Ripk3−/− MEFs with these viruses. Productively infected cells were FACS-sorted to obtain pure populations of RIPK3-expressing cells prior to being tested in necroptosis assays. Cell survival of MEFs was quantitated using the CellTiter-Glo Luminescent Cell Viability Assay per manufacturer’s instructions (Promega).
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8

Cell Death Induction and Inhibition

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Chemicals were obtained from Sigma unless otherwise indicated. Cells were treated with either zVad (25 μM or 50 μM, Bachem), Necrostatin-1 (Nec-1, 50 μM), caspase-8 inhibitor (50 μM, Merck), or respective combinations 30 min prior stimulation with either DMF, Etoposide (Biovision), LCL161 (Active Biochem), NBDII (Merck), PMX464 (Tocris) or TNFα (10 ng/ml) and Cycloheximide (Chx, 10 μg/ml). Cells were incubated with 5 μM carbonyl cyanide m-chlorophenyl hydrazone (CCCP) 10 min before measurement.
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9

Nec-1 Attenuates LPS-Induced Acute Lung Injury in Mice

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All animal procedures were approved by the Institutional Animal Care and Use Committee of Wenzhou Medical University. Mice were fasted for 8 h prior to the experiment. Before induction of ALI, the mice were anesthetized by inhalation of sevoflurane and were transtracheally injected with either Nec-1 (5 mg/kg; Enzo Life Sciences, Inc.) or saline as a control. LPS-induced ALI was induced by transtracheal injection of LPS (Sigma-Aldrich; Merck KGaA) at a dose of 10 mg/kg 30 min after Nec-1 or saline treatment. Additionally, the mice of sham-operation were transtracheally injected with saline and treated with saline only. During the experiment, the mice were monitored every 30 min. All mice survived until sacrifice 6 h after initiation of the experiment. The mice were sacrificed by cervical dislocation under 3% sevoflurane inhalation, after which, the lungs were quickly removed. Lung samples were either placed in a buffered solution for histopathological analysis, or snap-frozen for protein isolation or for analyzing apoptosis by flow cytometry. Prior to tissue collection, death was confirmed after 1–2 min of cardiac and respiratory observation.
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10

Preparation of PMA and Nec-1 Solutions

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Phorbol 12-myristate 13-acetate (PMA) (Sigma-Aldrich, USA, Cat No.) at an original concentration of 1 mg/mL was diluted with phosphate-buffered saline (PBS, Thermo Fisher, USA, Cat No.10010023) to a working solution of 1 μg/mL. Nec-1 (Merck, Germany, Cat No. 480065) at an original concentration of 5 mg/mL was diluted with PBS to a working solution of 1 mg/mL.
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