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8 protocols using resazurin

1

Determination of Antimicrobial MIC Using REMA

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The measurement of the minimum inhibitory concentration (MIC) of compounds 1 and 2 was determined using the resazurin reduction microplate assay (REMA) as described previously (Palomino et al., 2002 (link)). M. smegmatis, E. coli and P. putida were grown to mid-log phase, and the inoculum was standardized to 1 × 106 colony forming units (CFU)·mL−1 before addition to the prepared 96-well flat-bottom microtiter plate with twofold serial dilutions of each drug in media. An antibiotic control was also added to each plate (rifampicin for M. smegmatis, ampicillin for E. coli and tetracycline for P. putida), and the last column of the plate was used as a control without the addition of compound. In the case of M. smegmatis, the plates were incubated for 24 h at 37°C without shaking before an addition of 25 μL resazurin [one tablet of resazurin (VWR) dissolved in 30 mL of sterile PBS]. Following a further incubation at 37°C, the plates were assessed for colour development The MIC values were determined as the lowest concentration of drug that prevented the colour change of resazurin (blue – no bacterial growth) to resorufin (pink – bacterial growth). The MIC values were determined with five independent experimental repeats, and data are presented as mean ± SEM.
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2

Resazurin Microplate Assay for MIC Determination

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The minimum inhibitory concentrations (MIC) of all compounds were determined using the resazurin reduction microplate assay (REMA) as described previously (Palomino et al., 2002 (link)). M. smegmatis strains were grown to mid-log phase and the inoculum standardised to 1 × 106 colony forming units (CFU)/mL before addition to the 96-well flat-bottom microtiter plate containing 2-fold serial dilutions of each drug in media. Rifampicin was also added to each plate as a control antibiotic and the last column of the plate was used as a control without the addition of compound. The plates were incubated without shaking for 24 h before addition of 25 μL resazurin (one tablet of resazurin (VWR) dissolved in 30 mL of sterile PBS). Following a further 24 h incubation at 37 °C the plates were assessed for colour development. The MIC values were determined as the lowest concentration of drug that prevented the colour change of resazurin (blue: no bacterial growth) to resofurin (pink: bacterial growth).
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3

Tau Aggregation Inhibition Assay

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Epoxomicin, MG132, and lactacystin were purchased from Cayman Chemical. SP600125 was purchased from Cell Signaling. Trehalose was purchased from Calbiochem. Bafilomycin A1 was purchased from LC Laboratories. Resazurin and Calcein-AM were purchased from VWR. The polyclonal tau antibody was purchased from Dako. 12E8 (pSer262) was a gift from P. Seubert (Prothena, Inc) and PHF-1 (pSer396/404) was a gift from P. Davies (The Feinstein Institute for Medical Research). The other antibodies used in the study were AT-180 (pThr231, Pierce), anti-LC3B (Cell Signaling), anti-HSPB8 (Cell Signaling), anti-BAG3 (Proteintech), anti-β-actin (Millipore), and anti-α-tubulin (Pierce Biotechnology).
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4

Molecular Biology Reagents and Protocols

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Resazurin, G418, hygromycin, putrescine, and ornithine were purchased from VWR International (Radnor, PA). Phleomycin was procured from Thermo Fisher Scientific (Waltham, MA). Nω-hydroxy-l-arginine (NOHA), Nω-hydroxy-nor-l-arginine (nor-NOHA), S-(2-boronoethyl)-l-cysteine (BEC), and 2(S)-amino-6-boronohexanoic acid (ABH) were bought from Enzo (Farmingdale, NY). Restriction enzymes were acquired from New England BioLabs (Ipswich, MA). The Wizard SV gel and PCR clean-up system was purchased from Promega (Madison, WI), and the DNeasy kit was obtained from Qiagen Inc. (Valencia, CA). The pCR 2.1-TOPO vector and synthetic oligonucleotides were acquired from Invitrogen Corp. (Carlsbad, CA), and the Advantage HF2 DNA polymerase mix was purchased from BD Bioscience (Palo Alto, CA). The pRP-M vector was a gift from Phillip A. Yates, Oregon Health & Science University.
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5

Determining Antimicrobial Potency using REMA

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The measurement of the minimum inhibitory concentration (MIC) of compounds 1 and 2 was determined using the resazurin reduction microplate assay (REMA) as described previously (Palomino et al., 2002). M. smegmatis, E. coli and P. putida were grown to mid‐log phase, and the inoculum was standardized to 1 × 106 colony forming units (CFU)·mL−1 before addition to the prepared 96‐well flat‐bottom microtiter plate with twofold serial dilutions of each drug in media. An antibiotic control was also added to each plate (rifampicin for M. smegmatis, ampicillin for E. coli and tetracycline for P. putida), and the last column of the plate was used as a control without the addition of compound. In the case of M. smegmatis, the plates were incubated for 24 h at 37°C without shaking before an addition of 25 μL resazurin [one tablet of resazurin (VWR) dissolved in 30 mL of sterile PBS]. Following a further incubation at 37°C, the plates were assessed for colour development The MIC values were determined as the lowest concentration of drug that prevented the colour change of resazurin (blue – no bacterial growth) to resorufin (pink – bacterial growth). The MIC values were determined with five independent experimental repeats, and data are presented as mean ± SEM.
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6

Cell Viability Assay with Resazurin

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Equal numbers of Fut9 knockdown and control cells were seeded in 96 well plates (5 × 103 cells per well). After 72 h, the abundance of viable cells was analyzed using Resazurin (Fisher Scientific, AR002). Resazurin was added to each well at a concentration of 10% (v/v) and the plates were incubated at 37°C and read using SpectraMax M5 microplate reader (VWR) after 1, 2, 3, and 4 h. An increased number of viable cells reflect increased cell expansion.
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7

Minimum Inhibitory Concentration of Particles

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Minimum inhibitory concentration (MIC99) of the particles
was determined against M. smegmatis and E.
coli
. The bacteria were cultured to mid-log phase and the
inoculum was standardized to 1 × 105 CFU.mL–1 before addition to a 96-well microtiter plate in which the particles
were serially diluted two-fold across the plate. Control wells contained
culture controls and reference antibiotics (rifampicin for M. smegmatis and ampicillin for E. coli). The plates were incubated in a static incubator for 16 h for E. coli and 24 h for M. smegmatis. Following
this incubation period, 25 μL of resazurin (one tablet (VWR)
in 30 mL of sterile PBS) was added and left for a further incubation
for 24 h for M. smegmatis and 2 h for E.
coli
. The MIC99 values were determined as the
lowest concentration of particles at which the color did not change
of resazurin (blue, no bacterial growth) to resorufin (pink, bacterial
growth). The MIC99 values were determined in triplicate.
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8

Cell Culture Reagents and Viability

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Dulbecco's Modified Eagle's Medium, chicken serum, and phleomycin were procured from Thermo Fisher Scientific (Waltham, MA, USA). Resazurin, putrescine, and spermidine were purchased from VWR International (Radnor, PA, USA). Dansyl chloride was obtained from Sigma-Aldrich (Burlington, MA, USA), and the Muse Count and Viability reagent was purchased from Millipore (Burlington, MA, USA).
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