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10 protocols using agilent 7683 automatic liquid sampler

1

Quantifying Leaf Fructan Composition

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To determine the monosaccharide residue composition of the fructan, as well as to quantify the concentrations of fructans in leaves, acetylated alditol derivatization was performed [42 (link), 43 ]. This method hydrolyzes the polysaccharides to monosaccharides, which are then reduced with sodium borohydride (NaBH4). The alditols were per-O-acetylated and extracted in ethyl acetate and 4 mL water. Fifty μL were taken for analysis by GC-MS (Agilent 7890A GC System with an automated sample injection, Agilent 7683 Automatic Liquid Sampler and Agilent 5975 MS). The column employed was a Supelco SP-2380 (Sigma-Aldrich, 30 m x 0.25 mm x 0.20 μm). GC / MSD ChemStation software version E.02.00.493 from Agilent Technologies was used to analyze the chromatograms.
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2

GC-MS Analysis of Crude Extracts

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GC–MS analyses were performed on selected crude ethanolic extracts to identify the chemical components. A gas chromatography system (Model 6890 N; Agilent Technologies, Shanghai, China), coupled with a mass selective detector (Model 5973 N; Agilent Technologies, Delaware, USA) and a GC auto-sampler (Agilent 7683 Automatic Liquid Sampler, Santa Clara, California, USA), was employed for all analyses. Briefly, 2 μL of crude extracts (10.40 mg of DC, 10.74 mg of LC) were injected into the GC column equipped with a capillary column (122–5532 DB-5 ms, length 30.0 m, diameter 250 μm, film thickness 0.25 µm). The injection temperature was set to 250 °C. Helium was used as the carrier gas at a constant flow rate of 2 ml/min. The oven temperature program was 80 °C for 6 min, followed by a 5 °C min−1 oven temperature ramp to 280 °C within 70 min. The mass spectra were recorded with a 50–500 MHz scanning range using mass spectrometry. The chromatograms and mass spectra of constituents of the crude extracts were evaluated by comparing their mass spectra with those in the database (Wiley 7N.l database, Agilent Technology, New York, USA).
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3

GC-FID Analysis of Essential Oils

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For the quantitative analysis, an Agilent gas chromatograph (GC) (model 6890N series, Agilent Technologies, Santa Clara, CA, USA) equipped with a flame ionization detector (FID) was used. The GC-FID analyses were performed using a nonpolar Agilent J&W DB-5ms Ultra Inert GC column (30 m, 0.25 mm, 0.25 µm) (5%-phenyl-methylpolyxilosane), a polar Agilent J&W HP-INNOWax GC column (30 m, 0.25 mm, 0.25 µm) (polyethylene glycol), and an automatic injector (Agilent 7683 automatic liquid sampler, Agilent Technologies, Santa Clara, CA, USA) in split mode. The samples, 1 µL of solution (1/100, v/v, EO/DCM), were injected with a split ratio of 1:50. Helium was used as a carrier gas at 1 mL/min in constant flow mode and an average speed of 25 cm/s. The initial oven temperature was maintained at 50 °C for 3 min. and then heated to 230 °C with a ramp of 3 °C/min, and the temperature was maintained for 3 min until the end. The injector and detector temperatures were 250 °C. Quantification was done by the external standard method using calibration curves generated by running a GC analysis of representative compounds.
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4

GC-FID and GC-MS Analysis of Essential Oils

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The dentification of the chemical constituents of the essential oil was carried out using an Agilent gas chromatograph (GC) (6890N series, Agilent Technologies, Santa Clara, CA, USA). For the quantitative analysis gas chromatograph was equipped with a flame ionization detector (FID) and for qualitative analysis gas chromatograph was coupled to a mass spectrometer (quadrupole) detector (MS) (model Agilent 5973 inert series, Agilent Technologies, Santa Clara, CA, USA). The GC-FID and GC-MS analyses were performed according to the procedure described by Valarezo et al. [35 (link)]. The injection of the samples was carried out by an automatic injector (Agilent 7683 automatic liquid sampler, Agilent Technologies, Santa Clara, CA, USA) in split mode. Chromatographic runs were performed using a nonpolar and a polar column. The nonpolar was an Agilent J&W DB-5ms Ultra Inert GC column with stationary phase 5%-phenyl-methylpolyxilosane and the polar was an Agilent J&W HP-INNOWax GC column with stationary phase polyeth-ylene glycol. Both columns with a length of 30 m, an outer diameter of 0.25 mm and a stationary phase thickness of 0.25 µm. Identification of the EO compounds was based on a comparison of relative retention indices (RIs) and mass spectra data with those of the published literature [38 ,39 ] according as described by Valarezo et al. [36 (link)].
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5

Quantitative Analysis of Essential Oils

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For quantitative analysis, an Agilent gas chromatograph (GC) (model 6890N series, Agilent Technologies, Santa Clara, CA, USA) equipped with a flame ionization detector (FID) was used. The GC-FID analyses were performed using a nonpolar Agilent J&W DB-5 ms Ultra Inert GC column (30 m, 0.25 mm, 0.25 µm) (5%-phenyl-methylpolyxilosane), a polar Agilent J&W HP-INNOWax GC column (30 m, 0.25 mm, 0.25 µm) (polyethylene glycol), and an automatic injector (Agilent 7683 automatic liquid sampler, Agilent Technologies, Santa Clara, CA, USA) in split mode. The samples, 1 µL of solution (1/100, v/v, EO/DCM), were injected with a split ratio of 1:50. Helium was used as a carrier gas at 1 mL/min in constant flow mode and at an average velocity of 25 cm/s. The initial oven temperature was held at 50 °C for 3 min and then it was heated to 230 °C with a ramp of 3 °C/min, and the temperature was maintained for 3 min until the end. The injector and detector temperatures were 250 °C. Quantification was done by external standard method using calibration curves generated by running GC analysis of representative compounds.
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6

Quantitative Analysis of Essential Oils by GC-FID

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For the quantitative analysis, an Agilent gas chromatograph (GC) (model 6890N series, Agilent Technologies, Santa Clara, CA, USA) equipped with a flame ionization detector (FID) was used. The GC-FID analyses were performed using a nonpolar Agilent J&W DB-5ms Ultra Inert GC column (30 m, 0.25 mm, 0.25 µm) (5%-phenyl-methylpolyxilosane) and an automatic injector (Agilent 7683 automatic liquid sampler, Agilent Technologies, Santa Clara, CA, USA) in split mode. The samples, 1 µL of solution (1/100, v/v, EO/DCM), were injected with a split ratio of 1:50. Helium was used as a carrier gas at 1 mL/min in constant flow mode and an average speed of 25 cm/s. The initial oven temperature was maintained at 50 °C for 3 min and then it was heated to 230 °C with a ramp of 3 °C/min, and the temperature was maintained for 3 min until the end. The injector and detector temperatures were 250 °C. Quantification was done by the external standard method using calibration curves generated by running GC analysis of representative compounds.
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7

GC-MS Analysis of Organic Compounds

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The GC-MS system was an Agilent 6890N GC/5975C VL MSD system equipped with an Agilent 7683 Automatic Liquid Sampler (Agilent technologies, Inc., Santa Clara, CA, USA). The column was a DB-WAX column (30 m × 0.25 mm, 0.25 µm; Agilent J&W Scientific, Folsom, CA, USA). The inlet temperature of the GC was kept at 240 °C. Helium (≥99.999%) was used as carrier gas with a constant linear velocity of 1.0 mL/min. 1-μL aliquot was injected in splitless mode. The temperature program that was optimized for GC was as follows: the initial oven temperature as 70 °C, held for 1 min; 20 °C /min to 150 °C; 10 °C/min to 190 °C; 3 °C/min to 220 °C; 5 °C/min to 230 °C; 230 °C held for 12 min. The MS conditions were as follows: electron impact mode at ionization energy of 70 eV; ion source temperature at 230 °C; transfer line temperature at 240 °C; full scan mode in m/z range 35–550 with 0.3 s/scan velocity. The solvent delay was 3 min.
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8

GC-MS Analysis of Organic Compounds

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The GC-MS system was an Agilent 6890N GC/5975C VL MSD system equipped with an Agilent 7683 Automatic Liquid Sampler (Agilent technologies, Inc.). The column was a DB-WAX column (30 m × 0.32 mm × 0.25 μm; Agilent J&W Scientific, Folsom, CA, USA). The inlet temperature of the GC was kept at 240°C. Helium (99.999%) was used as carrier gas with a constant linear velocity of 1.88 mL/min. 1.0 μL aliquot was injected in splitless mode. The temperature program that was optimized for GC was as follows: the initial oven temperature as 60°C, held for 3 min; 4°C/min to 270°C, held for 3 min. The MS conditions were as follows: electron impact mode at ionization energy of 70 eV; solvent delay: 5.5 min; ion source temperature at 200°C; transfer line temperature at 300°C; full scan mode in m/z range 40–600.
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9

GC-MS Analysis of Organic Compounds

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For GC-MS analysis, an Agilent 6890N GC/5975C VL MSD system (Agilent Technologies, Inc., Santa Clara, CA, USA) was connected to an Agilent 7683 Automatic Liquid Sampler. The separation was performed on a HP-5MS column (30 m × 0.25 mm, 0.25 µm; Agilent J&W Scientific, Folsom, CA, USA). The temperature of the inlet was set at 250 °C. In the split-less mode, a 1µL aliquot was injected in helium at a constant flow rate of 1.0 mL/min. The temperature program optimized for GC was as follows: initial oven temperature as 70 °C, held for 1 min; 4 °C /min to 100 °C; 5 °C /min to 200 °C; 30 °C /min to 250 °C; 250 °C held for 5 min. The MS parameters were as follows: solvent delay, 5 min; ionization energy, 70 eV; temperatures of the ion source and transfer line, 230 °C; full scan mode in m/z range 70-550.
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10

GC-MS Analysis of Compounds

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GC-MS analyses were carried out using a Agilent 7683 Automatic Liquid sampler (Agilent Technologies, Palo Alto, USA). The GC-MS analyses were performed on an Agilent 6890N gas chromatograph coupled to an Agilent 5973N single quad mass selective detector. 2 µL was injected into the GC-MS system in split injection mode (split ratio 3,0:1). A VF-5ms column (Factor four, Agilent, California, VS) of 30 m (Ø 0.25 mm and film thickness of 0.30 µm) was used. Helium was delivered as carrier gas at a constant pressure of 14.65 psi with an initial flow of 1.3 mL min -1 .
The temperature gradient started at 80°C (held for 2 min) and rose with 20°C min -1 to reach 290°C, which was held for 10 min. The total run time was 22.5 min.
Temperatures of injection port, ion source, quadrupole and interface were set at 160, 230, 150 and 280°C, respectively. For quantification of compounds, the mass spectrometer was operated in selective ion monitoring (SIM) mode (100 ms dwell times). Table 1 presents the specific m/z ratios and the retention times.
Instrument control and data acquisition were performed by Agilent software (Enhance Chemstation 2004, Agilent).
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